Variant report

Variant	rs12215115
Chromosome Location	chr6:150800706-150800707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150800512..150803479-chr6:150810319..150812165,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10457863	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12154162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190672	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12191156	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12191289	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12194059	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12194349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196963	0.84[AMR][1000 genomes]
rs12200272	0.84[AMR][1000 genomes]
rs12200918	0.84[AMR][1000 genomes]
rs12207876	0.84[AMR][1000 genomes]
rs12209840	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12209935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212755	0.84[AMR][1000 genomes]
rs12212786	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12212968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212969	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12213006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214377	0.84[AMR][1000 genomes]
rs12214462	0.84[AMR][1000 genomes]
rs12216077	0.84[AMR][1000 genomes]
rs13191908	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13202911	0.84[AMR][1000 genomes]
rs13213392	0.84[AMR][1000 genomes]
rs13216373	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34674608	0.84[AMR][1000 genomes]
rs34781801	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34852202	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35060643	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35453290	0.84[AMR][1000 genomes]
rs35597895	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36003654	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71570225	0.84[AMR][1000 genomes]
rs71570226	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150799600-150800800	Enhancers	Fetal Lung	lung
2	chr6:150799800-150800800	Enhancers	Fetal Kidney	kidney
3	chr6:150799800-150800800	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links