Variant report

Variant	rs12191289
Chromosome Location	chr6:150807456-150807457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150806855..150809448-chr6:150811234..150813450,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10457863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11155740	1.00[AFR][1000 genomes]
rs12154162	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12190672	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191156	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12191443	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12194059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12194349	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12196963	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12200272	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12200918	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12201796	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12207876	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12209840	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12209935	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12212755	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12212786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12212968	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12212969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12213006	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12214377	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12214462	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12214961	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12215115	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12216077	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13191908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13202911	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13213392	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13216373	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34580132	0.82[EUR][1000 genomes]
rs34674608	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34781801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34852202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35060643	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35453290	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35597895	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35895305	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35966095	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs36003654	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71570225	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71570226	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150806400-150808200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:150806400-150808200	Enhancers	Adipose Nuclei	Adipose
3	chr6:150806400-150808200	Enhancers	Liver	Liver
4	chr6:150806400-150808200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:150806600-150807800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:150806600-150808000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:150807000-150807600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:150807000-150807800	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:150807200-150807800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:150807200-150808000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:150807400-150808000	Enhancers	Spleen	Spleen
12	chr6:150807400-150808000	Enhancers	HUVEC	blood vessel
13	chr6:150807400-150808200	Enhancers	Fetal Thymus	thymus

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