Variant report

Variant	rs13216373
Chromosome Location	chr6:150813048-150813049
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150812081..150813728-chr6:150830490..150832623,2	MCF-7	breast:
2	chr6:150807751..150809812-chr6:150811234..150814298,3	K562	blood:
3	chr6:150812964..150816383-chr6:150817541..150822095,5	K562	blood:
4	chr6:150806855..150809448-chr6:150811234..150813450,2	K562	blood:

Variant related genes	Relation type
ENSG00000219622	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10457863	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154162	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12190672	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12191156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191289	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12191443	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12194059	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194349	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12196963	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12200272	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12200918	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12201796	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12207876	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209840	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12209935	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12212755	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12212786	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212968	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12212969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213006	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12214377	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12214462	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12214961	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12215115	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12216077	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12216537	0.81[EUR][1000 genomes]
rs13191908	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13202911	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13210026	0.84[ASN][1000 genomes]
rs13213392	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34580132	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34674608	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34781801	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34852202	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35060643	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35453290	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35597895	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35895305	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35966095	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36003654	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71570225	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71570226	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150811200-150813200	Enhancers	Fetal Thymus	thymus
2	chr6:150811200-150815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:150811400-150813200	Enhancers	Thymus	Thymus
4	chr6:150811400-150813800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:150811400-150814000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:150811400-150814800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:150811400-150815000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:150811400-150815200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:150811600-150813200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:150811600-150813200	Enhancers	Esophagus	oesophagus
11	chr6:150811600-150813800	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:150811800-150813200	Enhancers	GM12878-XiMat	blood
13	chr6:150811800-150813600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:150811800-150814000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:150812000-150813200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:150812000-150813200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:150812000-150813600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:150812000-150814800	Enhancers	NH-A	brain
19	chr6:150812200-150813200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:150812200-150813200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:150812200-150813200	Enhancers	Fetal Intestine Large	intestine
22	chr6:150812200-150813600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:150812200-150814200	Enhancers	Stomach Mucosa	stomach
24	chr6:150812400-150813200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr6:150812400-150813200	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr6:150812400-150814800	Enhancers	HUVEC	blood vessel
27	chr6:150812600-150813200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:150812600-150813800	Weak transcription	Fetal Muscle Trunk	muscle
29	chr6:150812600-150813800	Enhancers	NHEK	skin
30	chr6:150812800-150813200	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:150812800-150813800	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr6:150813000-150813200	Enhancers	Duodenum Mucosa	Duodenum
33	chr6:150813000-150813400	Enhancers	HMEC	breast
34	chr6:150813000-150813600	Weak transcription	Gastric	stomach
35	chr6:150813000-150814000	Weak transcription	Muscle Satellite Cultured Cells	--

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