Variant report

Variant	rs12154162
Chromosome Location	chr6:150799803-150799804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10457863	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12190672	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12191156	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12191289	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12194059	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12194349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12196963	0.84[AMR][1000 genomes]
rs12200272	0.84[AMR][1000 genomes]
rs12200918	0.84[AMR][1000 genomes]
rs12207876	0.84[AMR][1000 genomes]
rs12209840	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12209935	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212755	0.84[AMR][1000 genomes]
rs12212786	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12212968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212969	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12213006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214377	0.84[AMR][1000 genomes]
rs12214462	0.84[AMR][1000 genomes]
rs12215115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12216077	0.84[AMR][1000 genomes]
rs13191908	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13202911	0.84[AMR][1000 genomes]
rs13213392	0.84[AMR][1000 genomes]
rs13216373	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34674608	0.84[AMR][1000 genomes]
rs34781801	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34852202	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35060643	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35453290	0.84[AMR][1000 genomes]
rs35597895	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36003654	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71570225	0.84[AMR][1000 genomes]
rs71570226	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv886773	chr6:150751951-150799803	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150799400-150800400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:150799400-150800600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:150799400-150800600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:150799600-150800200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:150799600-150800400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:150799600-150800400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:150799600-150800400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:150799600-150800400	Enhancers	Adipose Nuclei	Adipose
9	chr6:150799600-150800600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:150799600-150800800	Enhancers	Fetal Lung	lung
11	chr6:150799800-150800200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr6:150799800-150800200	Enhancers	Ovary	ovary
13	chr6:150799800-150800400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr6:150799800-150800400	Enhancers	Fetal Heart	heart
15	chr6:150799800-150800600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:150799800-150800600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr6:150799800-150800600	Enhancers	Fetal Muscle Leg	muscle
18	chr6:150799800-150800600	Enhancers	Fetal Thymus	thymus
19	chr6:150799800-150800800	Enhancers	Fetal Kidney	kidney
20	chr6:150799800-150800800	Enhancers	Fetal Stomach	stomach

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