Variant report

Variant	rs12207876
Chromosome Location	chr6:150812557-150812558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150812081..150813728-chr6:150830490..150832623,2	MCF-7	breast:
2	chr6:150807751..150809812-chr6:150811234..150814298,3	K562	blood:
3	chr6:150806855..150809448-chr6:150811234..150813450,2	K562	blood:

Variant related genes	Relation type
ENSG00000219622	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10457863	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154162	0.84[AMR][1000 genomes]
rs12190672	0.89[AMR][1000 genomes]
rs12191156	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191289	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12191443	0.83[ASN][1000 genomes]
rs12194059	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12194349	0.84[AMR][1000 genomes]
rs12196963	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12200272	0.89[AMR][1000 genomes]
rs12200918	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12201796	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12209840	0.89[AMR][1000 genomes]
rs12209935	0.84[AMR][1000 genomes]
rs12212755	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12212786	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212968	0.84[AMR][1000 genomes]
rs12212969	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213006	0.84[AMR][1000 genomes]
rs12214377	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12214462	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12214961	0.83[ASN][1000 genomes]
rs12215115	0.84[AMR][1000 genomes]
rs12216077	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13191908	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13202911	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13210026	0.84[ASN][1000 genomes]
rs13213392	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13216373	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34580132	0.83[ASN][1000 genomes]
rs34674608	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs34781801	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34852202	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35060643	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35453290	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35597895	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35895305	0.83[ASN][1000 genomes]
rs35966095	0.83[ASN][1000 genomes]
rs36003654	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71570225	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs71570226	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150811200-150812600	Enhancers	Placenta Amnion	Placenta Amnion
2	chr6:150811200-150813200	Enhancers	Fetal Thymus	thymus
3	chr6:150811200-150815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:150811400-150812600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:150811400-150813200	Enhancers	Thymus	Thymus
6	chr6:150811400-150813800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:150811400-150814000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:150811400-150814800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:150811400-150815000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:150811400-150815200	Enhancers	Fetal Muscle Leg	muscle
11	chr6:150811600-150813200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:150811600-150813200	Enhancers	Esophagus	oesophagus
13	chr6:150811600-150813800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr6:150811800-150812600	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:150811800-150813200	Enhancers	GM12878-XiMat	blood
16	chr6:150811800-150813600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:150811800-150814000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:150812000-150813000	Enhancers	Gastric	stomach
19	chr6:150812000-150813200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:150812000-150813200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:150812000-150813600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:150812000-150814800	Enhancers	NH-A	brain
23	chr6:150812200-150812800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:150812200-150813000	Enhancers	Primary T cells from cord blood	blood
25	chr6:150812200-150813000	Flanking Active TSS	HMEC	breast
26	chr6:150812200-150813200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:150812200-150813200	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr6:150812200-150813200	Enhancers	Fetal Intestine Large	intestine
29	chr6:150812200-150813600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:150812200-150814200	Enhancers	Stomach Mucosa	stomach
31	chr6:150812400-150812600	Flanking Active TSS	Duodenum Mucosa	Duodenum
32	chr6:150812400-150812600	Flanking Active TSS	NHEK	skin
33	chr6:150812400-150813200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr6:150812400-150813200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr6:150812400-150814800	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links