Variant report

Variant	rs11158766
Chromosome Location	chr14:69288181-69288182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69283985..69288405-chr14:69289661..69293345,5	K562	blood:
2	chr14:68406502..68410391-chr14:69284099..69289375,6	MCF-7	breast:
3	chr14:69284387..69286906-chr14:69288096..69291991,4	K562	blood:
4	chr14:69281839..69285044-chr14:69286277..69289446,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10138953	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11623906	0.80[CEU][hapmap]
rs61985015	0.84[EUR][1000 genomes]
rs7152463	0.80[CEU][hapmap]
rs7155978	0.84[EUR][1000 genomes]
rs7159916	1.00[CEU][hapmap]
rs8016829	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69283600-69289600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr14:69283800-69289400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:69283800-69289600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr14:69283800-69291200	Weak transcription	Brain Germinal Matrix	brain
5	chr14:69284000-69289600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:69284000-69291200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:69284000-69291200	Weak transcription	Right Atrium	heart
8	chr14:69284000-69291400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:69284000-69291400	Weak transcription	HSMM	muscle
10	chr14:69284000-69300200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:69284200-69291400	Weak transcription	Osteobl	bone
12	chr14:69284200-69305600	Weak transcription	HSMMtube	muscle
13	chr14:69284400-69291200	Weak transcription	Adipose Nuclei	Adipose
14	chr14:69284400-69291400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:69284600-69291200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:69284800-69289800	Weak transcription	Pancreas	Pancrea
17	chr14:69285200-69288200	Enhancers	Primary T cells from cord blood	blood
18	chr14:69285200-69291800	Enhancers	Fetal Muscle Leg	muscle
19	chr14:69285400-69288200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr14:69285400-69289600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr14:69285800-69288200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:69285800-69288200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr14:69285800-69288800	Enhancers	Primary hematopoietic stem cells	blood
24	chr14:69285800-69289400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr14:69285800-69290000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:69285800-69290000	Enhancers	Fetal Thymus	thymus
27	chr14:69286000-69288600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr14:69286000-69288800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:69286000-69289200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr14:69286000-69289600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:69286000-69291400	Weak transcription	NHDF-Ad	bronchial
32	chr14:69286000-69291800	Enhancers	Fetal Muscle Trunk	muscle
33	chr14:69286200-69288400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:69286200-69289200	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr14:69286200-69289600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr14:69286200-69289800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr14:69286400-69288400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:69286400-69289000	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:69286400-69291400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr14:69286600-69288200	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr14:69286600-69289200	Weak transcription	HMEC	breast
42	chr14:69286600-69290800	Weak transcription	Ovary	ovary
43	chr14:69286800-69288800	Weak transcription	K562	blood
44	chr14:69286800-69289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr14:69286800-69291200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:69286800-69291200	Weak transcription	NHLF	lung
47	chr14:69286800-69291400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:69286800-69291400	Weak transcription	Fetal Heart	heart
49	chr14:69286800-69291400	Weak transcription	NH-A	brain
50	chr14:69286800-69291800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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