Variant report

Variant	rs7155978
Chromosome Location	chr14:69252255-69252256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:50)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:50 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69095355..69099854-chr14:69250960..69255583,6	MCF-7	breast:
2	chr14:69090615..69103406-chr14:69249821..69264188,29	MCF-7	breast:
3	chr14:69122387..69124084-chr14:69250804..69252456,2	MCF-7	breast:
4	chr14:69204312..69206697-chr14:69251799..69254255,2	K562	blood:
5	chr14:69134295..69136802-chr14:69251321..69253265,2	MCF-7	breast:
6	chr14:69252105..69254331-chr7:155601869..155604492,2	MCF-7	breast:
7	chr14:69150930..69152614-chr14:69251303..69253667,2	MCF-7	breast:
8	chr14:68641461..68644387-chr14:69250543..69254390,3	MCF-7	breast:
9	chr14:68941663..68944828-chr14:69250861..69253636,3	MCF-7	breast:
10	chr14:69219042..69221394-chr14:69250873..69253733,2	MCF-7	breast:
11	chr14:68400013..68402896-chr14:69251166..69253884,2	MCF-7	breast:
12	chr14:69163375..69164985-chr14:69252113..69253661,2	MCF-7	breast:
13	chr14:69251493..69253776-chr16:2254410..2257128,2	MCF-7	breast:
14	chr14:68930492..68947840-chr14:69251918..69264148,62	MCF-7	breast:
15	chr14:69218982..69221313-chr14:69251306..69253828,3	MCF-7	breast:
16	chr14:68704238..68708340-chr14:69251416..69255393,5	MCF-7	breast:
17	chr14:69050025..69052372-chr14:69251168..69253724,2	MCF-7	breast:
18	chr14:69189213..69193249-chr14:69249817..69253831,4	MCF-7	breast:
19	chr14:68656774..68658539-chr14:69251290..69253166,2	MCF-7	breast:
20	chr14:69175919..69179452-chr14:69252048..69254432,3	MCF-7	breast:
21	chr14:69054452..69058686-chr14:69249853..69254831,4	MCF-7	breast:
22	chr14:68658549..68661860-chr14:69250890..69254751,3	MCF-7	breast:
23	chr14:68681266..68683165-chr14:69251236..69254118,2	MCF-7	breast:
24	chr14:68299804..68301953-chr14:69252103..69254341,2	MCF-7	breast:
25	chr14:68951909..68954221-chr14:69252070..69254907,3	MCF-7	breast:
26	chr14:68855776..68858579-chr14:69251662..69254068,2	MCF-7	breast:
27	chr14:69035875..69039894-chr14:69250533..69252732,3	MCF-7	breast:
28	chr14:69088224..69090068-chr14:69250540..69253091,2	MCF-7	breast:
29	chr14:69172503..69174467-chr14:69252049..69253915,2	MCF-7	breast:
30	chr14:69130772..69132590-chr14:69251342..69252982,2	MCF-7	breast:
31	chr14:69179231..69184883-chr14:69249659..69253927,5	MCF-7	breast:
32	chr14:69159721..69161341-chr14:69251860..69253387,2	MCF-7	breast:
33	chr14:68827778..68831796-chr14:69251511..69256304,4	MCF-7	breast:
34	chr14:68659031..68663058-chr14:69251667..69256012,5	MCF-7	breast:
35	chr14:68850472..68852853-chr14:69251979..69254595,2	MCF-7	breast:
36	chr14:68744987..68750260-chr14:69250111..69256950,7	MCF-7	breast:
37	chr14:68697979..68700527-chr14:69251377..69254277,2	MCF-7	breast:
38	chr14:68405495..68411980-chr14:69250946..69254866,9	MCF-7	breast:
39	chr14:68986084..68990937-chr14:69249749..69255560,7	MCF-7	breast:
40	chr14:69193445..69195647-chr14:69250713..69253431,2	MCF-7	breast:
41	chr14:69030740..69033327-chr14:69250048..69252689,2	K562	blood:
42	chr14:69022061..69023580-chr14:69250425..69252837,2	MCF-7	breast:
43	chr14:69041655..69043328-chr14:69251823..69254372,2	MCF-7	breast:
44	chr14:68931679..68940045-chr14:69251548..69257130,11	MCF-7	breast:
45	chr14:69135342..69138220-chr14:69251812..69254246,3	MCF-7	breast:
46	chr14:69036141..69039001-chr14:69250831..69253472,2	MCF-7	breast:
47	chr14:69175164..69177476-chr14:69251993..69254920,2	MCF-7	breast:
48	chr14:68607251..68609680-chr14:69249832..69252803,2	MCF-7	breast:
49	chr14:68925872..68927524-chr14:69250657..69253256,2	MCF-7	breast:
50	chr14:69029510..69035367-chr14:69250877..69256211,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258623	Chromatin interaction
ENSG00000259038	Chromatin interaction
ENSG00000167965	Chromatin interaction
ENSG00000252958	Chromatin interaction
ENSG00000182185	Chromatin interaction
ENSG00000242941	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10138717	0.94[EUR][1000 genomes]
rs10138953	0.90[EUR][1000 genomes]
rs11158766	0.84[EUR][1000 genomes]
rs28490497	0.87[EUR][1000 genomes]
rs55834579	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61985011	0.83[EUR][1000 genomes]
rs61985015	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153919	0.91[EUR][1000 genomes]
rs7159916	0.91[EUR][1000 genomes]
rs8016829	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69244400-69253200	Enhancers	Fetal Intestine Large	intestine
2	chr14:69244400-69253600	Enhancers	Stomach Mucosa	stomach
3	chr14:69245600-69253200	Enhancers	Fetal Thymus	thymus
4	chr14:69247000-69252400	Enhancers	Liver	Liver
5	chr14:69248000-69253200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:69248000-69254000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:69248000-69254000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr14:69248200-69253200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:69248200-69253400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:69248200-69253400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr14:69248200-69253400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:69248200-69253600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:69248200-69253600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr14:69248200-69254000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:69248200-69254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:69248200-69255800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:69248400-69252400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr14:69248400-69253400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:69248400-69253400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr14:69248400-69253600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:69248400-69253600	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:69248400-69253600	Weak transcription	Psoas Muscle	Psoas
23	chr14:69248400-69253800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:69248400-69253800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr14:69248400-69254000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:69248400-69255800	Weak transcription	Brain Anterior Caudate	brain
27	chr14:69248600-69253000	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr14:69248600-69253200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr14:69248600-69253200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr14:69248600-69253400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr14:69248600-69253600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr14:69248600-69253600	Weak transcription	HSMMtube	muscle
33	chr14:69248600-69253800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr14:69248600-69255000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr14:69248600-69255800	Weak transcription	Brain Angular Gyrus	brain
36	chr14:69248800-69253000	Weak transcription	Primary B cells from cord blood	blood
37	chr14:69248800-69253000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
38	chr14:69248800-69253600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr14:69248800-69255200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr14:69249000-69253600	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:69249000-69253800	Weak transcription	Brain Substantia Nigra	brain
42	chr14:69249000-69255200	Weak transcription	Fetal Brain Male	brain
43	chr14:69249200-69253800	Weak transcription	Right Ventricle	heart
44	chr14:69249200-69254000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:69249400-69252600	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr14:69249400-69252600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr14:69249400-69253600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:69249400-69253600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr14:69249400-69254200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr14:69249600-69252600	Weak transcription	Fetal Heart	heart

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