Variant report

Variant	rs61985015
Chromosome Location	chr14:69249388-69249389
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69247911..69250643-chr14:69303141..69305926,2	MCF-7	breast:
2	chr14:69239634..69241478-chr14:69247451..69250046,2	K562	blood:
3	chr14:69126667..69128513-chr14:69248793..69251052,2	MCF-7	breast:
4	chr14:68823758..68825352-chr14:69246991..69249510,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10138717	0.94[EUR][1000 genomes]
rs10138953	0.90[EUR][1000 genomes]
rs11158766	0.84[EUR][1000 genomes]
rs28490497	0.87[EUR][1000 genomes]
rs55834579	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61985011	0.83[EUR][1000 genomes]
rs7153919	0.91[EUR][1000 genomes]
rs7155978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7159916	0.91[EUR][1000 genomes]
rs8016829	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035267	chr14:69230254-69348126	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv542123	chr14:69230254-69348126	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv902070	chr14:69244214-69308182	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69244200-69249600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:69244400-69252200	Enhancers	Fetal Intestine Small	intestine
3	chr14:69244400-69253200	Enhancers	Fetal Intestine Large	intestine
4	chr14:69244400-69253600	Enhancers	Stomach Mucosa	stomach
5	chr14:69244600-69249600	Enhancers	Fetal Heart	heart
6	chr14:69244600-69250000	Enhancers	Fetal Lung	lung
7	chr14:69244800-69249400	Enhancers	Colon Smooth Muscle	Colon
8	chr14:69245000-69249600	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr14:69245000-69249800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:69245200-69250200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr14:69245400-69249400	Enhancers	HUVEC	blood vessel
12	chr14:69245600-69250200	Enhancers	Pancreas	Pancrea
13	chr14:69245600-69253200	Enhancers	Fetal Thymus	thymus
14	chr14:69245800-69249600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:69245800-69249600	Enhancers	Left Ventricle	heart
16	chr14:69245800-69249600	Enhancers	Lung	lung
17	chr14:69245800-69249800	Enhancers	Placenta	Placenta
18	chr14:69246000-69249400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr14:69246000-69249600	Enhancers	Small Intestine	intestine
20	chr14:69246200-69249400	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr14:69246200-69249400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:69246200-69249600	Enhancers	Fetal Muscle Leg	muscle
23	chr14:69246200-69250000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
24	chr14:69246400-69249400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr14:69246400-69249600	Enhancers	Fetal Stomach	stomach
26	chr14:69246400-69249800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr14:69246800-69249600	Enhancers	Spleen	Spleen
28	chr14:69246800-69249600	Enhancers	Dnd41	blood
29	chr14:69246800-69250000	Enhancers	Right Atrium	heart
30	chr14:69247000-69249600	Enhancers	Esophagus	oesophagus
31	chr14:69247000-69249800	Enhancers	Fetal Muscle Trunk	muscle
32	chr14:69247000-69252400	Enhancers	Liver	Liver
33	chr14:69247400-69249400	Enhancers	Adipose Nuclei	Adipose
34	chr14:69247600-69250200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:69247600-69250400	Enhancers	A549	lung
36	chr14:69247800-69249400	Enhancers	Stomach Smooth Muscle	stomach
37	chr14:69247800-69249600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:69247800-69251000	Weak transcription	GM12878-XiMat	blood
39	chr14:69248000-69249400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:69248000-69249600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr14:69248000-69249600	Enhancers	Thymus	Thymus
42	chr14:69248000-69250000	Enhancers	K562	blood
43	chr14:69248000-69250800	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr14:69248000-69253200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:69248000-69254000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr14:69248000-69254000	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:69248200-69249800	Enhancers	Ovary	ovary
48	chr14:69248200-69250400	Enhancers	HepG2	liver
49	chr14:69248200-69253200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr14:69248200-69253400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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