Variant report

Variant	rs11158952
Chromosome Location	chr14:25346522-25346523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158951	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11550670	0.86[MEX][hapmap]
rs1241598	0.93[CEU][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs1241640	0.93[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1241641	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1241642	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1263222	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17795885	0.82[EUR][1000 genomes]
rs854403	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25331000-25349800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr14:25331200-25349800	Weak transcription	HSMM	muscle
3	chr14:25342400-25346800	Enhancers	Adipose Nuclei	Adipose
4	chr14:25342800-25351000	Enhancers	Brain Substantia Nigra	brain
5	chr14:25343000-25351200	Enhancers	Brain Cingulate Gyrus	brain
6	chr14:25343200-25349000	Weak transcription	Right Atrium	heart
7	chr14:25343200-25349600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:25343800-25347600	Enhancers	Brain Angular Gyrus	brain
9	chr14:25344000-25351000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:25344200-25346800	Enhancers	Fetal Lung	lung
11	chr14:25344400-25346600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr14:25344400-25348800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:25344400-25349000	Weak transcription	Left Ventricle	heart
14	chr14:25344400-25349000	Weak transcription	Lung	lung
15	chr14:25344600-25346600	Enhancers	HepG2	liver
16	chr14:25344600-25354200	Weak transcription	Fetal Intestine Large	intestine
17	chr14:25344800-25349400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr14:25344800-25349600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:25345200-25348800	Weak transcription	Fetal Heart	heart
20	chr14:25345200-25349200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr14:25345400-25347000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:25345400-25349400	Weak transcription	NHDF-Ad	bronchial
23	chr14:25345600-25349000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:25345800-25346600	Weak transcription	Gastric	stomach
25	chr14:25345800-25346800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr14:25345800-25349000	Weak transcription	Pancreas	Pancrea
27	chr14:25345800-25349000	Weak transcription	Right Ventricle	heart
28	chr14:25345800-25349600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr14:25346000-25347000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:25346000-25349000	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:25346000-25349000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr14:25346000-25358000	Weak transcription	Fetal Intestine Small	intestine
33	chr14:25346200-25346800	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr14:25346200-25347600	Enhancers	Brain Hippocampus Middle	brain
35	chr14:25346200-25348800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:25346200-25349200	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:25346200-25350400	Weak transcription	Stomach Mucosa	stomach
38	chr14:25346200-25351200	Enhancers	Brain Anterior Caudate	brain
39	chr14:25346400-25346600	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr14:25346400-25346800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:25346400-25347000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr14:25346400-25347000	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr14:25346400-25348800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:25346400-25348800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:25346400-25350400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links