Variant report

Variant	rs1241642
Chromosome Location	chr14:25351974-25351975
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11158951	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11158952	0.86[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1241598	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1241640	0.81[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1241641	0.86[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1263222	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17795885	0.87[AMR][1000 genomes]
rs1958354	0.95[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs854403	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1810592	chr14:25346636-25354756	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25344600-25354200	Weak transcription	Fetal Intestine Large	intestine
2	chr14:25346000-25358000	Weak transcription	Fetal Intestine Small	intestine
3	chr14:25349200-25361800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:25349800-25352800	Weak transcription	Psoas Muscle	Psoas
5	chr14:25349800-25357000	Weak transcription	Right Ventricle	heart
6	chr14:25350200-25354400	Weak transcription	Pancreas	Pancrea
7	chr14:25350400-25353600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:25350600-25354800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr14:25350600-25364600	Weak transcription	NHDF-Ad	bronchial
10	chr14:25351000-25352600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:25351000-25353400	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:25351000-25353800	Weak transcription	Brain Substantia Nigra	brain
13	chr14:25351000-25354200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:25351000-25354600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:25351000-25356800	Weak transcription	HSMM	muscle
16	chr14:25351200-25352200	Weak transcription	HSMMtube	muscle
17	chr14:25351200-25352400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:25351200-25352600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:25351200-25353600	Weak transcription	HepG2	liver
20	chr14:25351200-25353800	Weak transcription	Brain Angular Gyrus	brain
21	chr14:25351200-25354200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:25351200-25361600	Weak transcription	Fetal Heart	heart
23	chr14:25351200-25361800	Weak transcription	Right Atrium	heart
24	chr14:25351200-25363800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr14:25351800-25352000	Enhancers	Stomach Smooth Muscle	stomach
26	chr14:25351800-25353200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr14:25351800-25354400	Weak transcription	Left Ventricle	heart

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