Variant report

Variant	rs17795885
Chromosome Location	chr14:25369747-25369748
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11158952	0.82[EUR][1000 genomes]
rs1241598	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1241640	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1241641	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1241642	0.87[AMR][1000 genomes]
rs1263222	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901506	chr14:25295551-25377188	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1041445	chr14:25326692-25388290	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25358400-25369800	Weak transcription	HSMM	muscle
2	chr14:25362400-25378400	Weak transcription	Lung	lung
3	chr14:25364600-25372400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:25364800-25370000	Weak transcription	Right Atrium	heart
5	chr14:25364800-25379800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr14:25366200-25377000	Weak transcription	Left Ventricle	heart
7	chr14:25366200-25377000	Weak transcription	Pancreas	Pancrea
8	chr14:25369000-25370800	Enhancers	NHDF-Ad	bronchial
9	chr14:25369200-25370000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:25369200-25370200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:25369200-25370400	Enhancers	Adipose Nuclei	Adipose
12	chr14:25369200-25370400	Enhancers	Brain Angular Gyrus	brain
13	chr14:25369200-25370600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:25369400-25369800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:25369400-25369800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:25369400-25369800	Flanking Active TSS	Brain Anterior Caudate	brain
17	chr14:25369400-25369800	Enhancers	HSMMtube	muscle
18	chr14:25369400-25369800	Flanking Active TSS	Osteobl	bone
19	chr14:25369400-25370000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr14:25369400-25370000	Enhancers	Fetal Muscle Leg	muscle
21	chr14:25369400-25370000	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr14:25369400-25370200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:25369400-25370200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:25369400-25370200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr14:25369400-25370200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr14:25369400-25370200	Enhancers	Brain Cingulate Gyrus	brain
27	chr14:25369400-25370200	Enhancers	Brain Hippocampus Middle	brain
28	chr14:25369400-25370200	Enhancers	Fetal Heart	heart
29	chr14:25369400-25370200	Enhancers	Fetal Stomach	stomach
30	chr14:25369400-25370200	Enhancers	NHLF	lung
31	chr14:25369400-25370400	Enhancers	Brain Substantia Nigra	brain
32	chr14:25369600-25369800	Flanking Active TSS	Fetal Lung	lung
33	chr14:25369600-25370200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr14:25369600-25370200	Enhancers	Colon Smooth Muscle	Colon

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