The 2.0 version of rSNPBase

Variant report

Variant rs11161817
Chromosome Location chr1:86896116-86896117
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86890600-86903000 Weak transcription Esophagus oesophagus
2 chr1:86894200-86897400 Enhancers Primary hematopoietic stem cells short term culture blood
3 chr1:86894400-86896200 Enhancers Primary T helper 17 cells PMA-I stimulated --
4 chr1:86894400-86896400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr1:86894400-86896600 Enhancers Fetal Adrenal Gland Adrenal Gland
6 chr1:86894400-86896600 Enhancers Sigmoid Colon Sigmoid Colon
7 chr1:86894400-86896600 Enhancers Dnd41 blood
8 chr1:86894400-86897000 Enhancers Primary monocytes fromperipheralblood blood
9 chr1:86894400-86900200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr1:86894600-86896600 Enhancers Breast Myoepithelial Primary Cells Breast
11 chr1:86894600-86896600 Enhancers Osteobl bone
12 chr1:86894800-86896200 Enhancers Primary T cells from cord blood blood
13 chr1:86894800-86896200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr1:86894800-86896200 Enhancers Adipose Nuclei Adipose
15 chr1:86894800-86896400 Enhancers Primary hematopoietic stem cells blood
16 chr1:86894800-86896400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
17 chr1:86894800-86896400 Enhancers NHLF lung
18 chr1:86894800-86896600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr1:86894800-86897200 Enhancers NHDF-Ad bronchial
20 chr1:86895000-86896200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr1:86895000-86896200 Enhancers Primary mononuclear cells fromperipheralblood Blood
22 chr1:86895000-86896200 Enhancers HSMM muscle
23 chr1:86895000-86896400 Enhancers Muscle Satellite Cultured Cells --
24 chr1:86895000-86896400 Enhancers Placenta Amnion Placenta Amnion
25 chr1:86895000-86896600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr1:86895000-86896600 Enhancers HUVEC blood vessel
27 chr1:86895000-86898800 Weak transcription Spleen Spleen
28 chr1:86895200-86896200 Enhancers Skeletal Muscle Female skeletal muscle
29 chr1:86895200-86896400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:86895200-86896600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr1:86895200-86896600 Enhancers NH-A brain
32 chr1:86895400-86896200 Enhancers A549 lung
33 chr1:86895600-86896400 Bivalent Enhancer Stomach Mucosa stomach
34 chr1:86895600-86896600 Enhancers H9 Cell Line embryonic stem cell
35 chr1:86895600-86896600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr1:86895800-86896200 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:86895800-86896200 Flanking Active TSS Hela-S3 cervix
38 chr1:86895800-86896200 Flanking Active TSS HMEC breast
39 chr1:86895800-86896400 Enhancers Rectal Mucosa Donor 31 rectum
40 chr1:86895800-86896400 Flanking Active TSS NHEK skin
41 chr1:86896000-86896200 Flanking Active TSS Fetal Lung lung
42 chr1:86896000-86896400 Enhancers HUES48 Cell Line embryonic stem cell
43 chr1:86896000-86896400 Enhancers Placenta Placenta
44 chr1:86896000-86896400 Enhancers Small Intestine intestine
45 chr1:86896000-86896600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:86896000-86896600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015