The 2.0 version of rSNPBase

Variant report

Variant rs272518
Chromosome Location chr1:86849084-86849085
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:86815200-86860200 Weak transcription Fetal Brain Male brain
2 chr1:86818000-86851600 Weak transcription Placenta Amnion Placenta Amnion
3 chr1:86820200-86854400 Weak transcription Primary T killer naive cells fromperipheralblood blood
4 chr1:86820200-86854800 Weak transcription HSMMtube muscle
5 chr1:86820400-86860200 Weak transcription NHEK skin
6 chr1:86836600-86860800 Weak transcription Aorta Aorta
7 chr1:86840600-86859600 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr1:86841000-86849400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr1:86841000-86851400 Weak transcription HMEC breast
10 chr1:86841000-86854400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr1:86841000-86859800 Weak transcription HSMM muscle
12 chr1:86841600-86859800 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr1:86841800-86855000 Weak transcription Primary T cells fromperipheralblood blood
14 chr1:86843400-86855000 Weak transcription Brain Cingulate Gyrus brain
15 chr1:86843400-86860800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
16 chr1:86843600-86858600 Weak transcription Brain Hippocampus Middle brain
17 chr1:86843600-86859200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
18 chr1:86843600-86860600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:86843600-86860800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
20 chr1:86843800-86854000 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr1:86844400-86849200 Weak transcription Left Ventricle heart
22 chr1:86844600-86853400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr1:86844800-86855000 Weak transcription Thymus Thymus
24 chr1:86844800-86859200 Weak transcription Brain Germinal Matrix brain
25 chr1:86844800-86861000 Weak transcription Fetal Intestine Small intestine
26 chr1:86845000-86850800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:86845000-86853800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:86845000-86855000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr1:86845000-86859200 Weak transcription NH-A brain
30 chr1:86845000-86859400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:86845000-86860200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr1:86845000-86860600 Weak transcription Fetal Thymus thymus
33 chr1:86845000-86860800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr1:86845200-86859400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
35 chr1:86845800-86851200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:86846600-86860400 Weak transcription HUES48 Cell Line embryonic stem cell
37 chr1:86846800-86853600 Weak transcription Muscle Satellite Cultured Cells --
38 chr1:86847000-86849400 Enhancers Osteobl bone
39 chr1:86847200-86849200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr1:86847400-86849800 Weak transcription Liver Liver
41 chr1:86848000-86849200 Enhancers Primary hematopoietic stem cells short term culture blood
42 chr1:86848000-86849600 Enhancers Primary T helper cells fromperipheralblood blood
43 chr1:86848200-86849400 Enhancers Primary T helper naive cells from peripheral blood blood
44 chr1:86848200-86849800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
45 chr1:86848400-86849400 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:86848400-86849800 Enhancers Primary T cells from cord blood blood
47 chr1:86848600-86849200 Flanking Active TSS HUVEC blood vessel
48 chr1:86848600-86849400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
49 chr1:86848800-86849200 Active TSS Pancreatic Islets Pancreatic Islet
50 chr1:86848800-86849200 Flanking Active TSS Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015