Variant report

Variant	rs11162716
Chromosome Location	chr1:79933094-79933095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11802989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11805270	0.80[AFR][1000 genomes]
rs12057387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073000	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494846	1.00[AMR][1000 genomes]
rs1494850	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494851	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3000137	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3000138	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553617	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79933000-79933200	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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