Variant report

Variant	rs1494862
Chromosome Location	chr1:79924546-79924547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11162716	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11802989	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12057387	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071369	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073000	1.00[AMR][1000 genomes]
rs1494846	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494850	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3000137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3000138	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553617	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79922800-79927200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:79924200-79925400	Weak transcription	GM12878-XiMat	blood
3	chr1:79924400-79927400	Strong transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links