Variant report

Variant	rs11802989
Chromosome Location	chr1:79934012-79934013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11162716	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12057387	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12073000	1.00[AMR][1000 genomes]
rs12077125	1.00[MEX][hapmap]
rs1494846	1.00[AMR][1000 genomes]
rs1494850	1.00[AMR][1000 genomes]
rs1494851	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1494862	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3000137	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3000138	1.00[AMR][1000 genomes]
rs7553617	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004014	chr1:79811049-80042309	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11802989	IGF2BP3	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79933400-79934400	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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