Variant report

Variant	rs1116471
Chromosome Location	chr11:35094632-35094633
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1116470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1425805	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1834459	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1834460	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1895821	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2098878	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2553772	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2553773	0.89[EUR][1000 genomes]
rs2553777	0.87[EUR][1000 genomes]
rs2553783	0.86[EUR][1000 genomes]
rs2553826	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2553827	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2732540	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2732544	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2732546	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732547	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732549	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732550	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732552	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785193	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785194	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785197	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2785198	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2785201	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785202	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs387619	0.91[EUR][1000 genomes]
rs429503	0.94[EUR][1000 genomes]
rs627096	0.86[EUR][1000 genomes]
rs675970	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs693163	0.86[EUR][1000 genomes]
rs879487	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35088600-35099000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:35088800-35099200	Weak transcription	Stomach Mucosa	stomach
3	chr11:35089200-35098000	Weak transcription	Small Intestine	intestine
4	chr11:35091000-35098000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:35091200-35097600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr11:35091200-35099800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:35092200-35099000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:35093200-35095800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr11:35093400-35095600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr11:35093600-35094800	Enhancers	Primary T cells from cord blood	blood
11	chr11:35094200-35095400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr11:35094200-35095600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:35094200-35096400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr11:35094200-35097600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr11:35094200-35097600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:35094400-35097600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr11:35094400-35097600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr11:35094600-35094800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr11:35094600-35095000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:35094600-35095800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:35094600-35095800	Enhancers	Osteobl	bone

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