Variant report

Variant	rs2553772
Chromosome Location	chr11:35085453-35085454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35083507..35086389-chr11:35411165..35412873,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1116470	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1116471	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1425805	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1834459	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1834460	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1895821	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2098878	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2553773	0.90[EUR][1000 genomes]
rs2553777	0.86[EUR][1000 genomes]
rs2553783	0.86[EUR][1000 genomes]
rs2553826	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2553827	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2732540	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732544	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732546	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732547	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732549	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2732550	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2732552	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785193	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785194	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785197	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2785198	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2785201	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785202	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387619	0.90[EUR][1000 genomes]
rs429503	0.93[EUR][1000 genomes]
rs627096	0.86[EUR][1000 genomes]
rs675970	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs693163	0.86[EUR][1000 genomes]
rs879487	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv430371	chr11:34975067-35111292	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv1826391	chr11:35000983-35098193	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv540999	chr11:35021936-35185471	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2758263	chr11:35029933-35226784	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv2759818	chr11:35029933-35238578	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv541000	chr11:35053717-35185471	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv541001	chr11:35053717-35224624	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	esv2757437	chr11:35067482-35238578	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	esv2752912	chr11:35074167-35238578	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35070600-35087000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr11:35080800-35087800	Weak transcription	GM12878-XiMat	blood
3	chr11:35081400-35085600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:35081400-35087400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:35081600-35086200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:35081600-35087400	Weak transcription	Fetal Thymus	thymus
7	chr11:35081600-35088200	Weak transcription	Primary B cells from cord blood	blood
8	chr11:35081800-35085600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr11:35081800-35087400	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr11:35081800-35087400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:35081800-35088400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:35082000-35087800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr11:35082200-35087200	Weak transcription	Primary T cells from cord blood	blood
14	chr11:35082200-35087200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:35082200-35087400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr11:35083400-35086400	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:35083800-35087400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:35084200-35086200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:35084200-35087400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr11:35084600-35085600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:35084600-35085800	Enhancers	K562	blood
22	chr11:35084600-35087600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr11:35084600-35090600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr11:35084800-35087200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr11:35084800-35088400	Weak transcription	Esophagus	oesophagus
26	chr11:35085000-35085600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr11:35085000-35086800	Enhancers	Adipose Nuclei	Adipose
28	chr11:35085000-35088000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:35085000-35089000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr11:35085200-35086000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:35085200-35086200	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:35085200-35087600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:35085200-35089000	Enhancers	NHLF	lung
34	chr11:35085400-35085600	Enhancers	Pancreas	Pancrea
35	chr11:35085400-35085600	Enhancers	Spleen	Spleen
36	chr11:35085400-35085800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:35085400-35085800	Flanking Active TSS	NHDF-Ad	bronchial
38	chr11:35085400-35086200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:35085400-35086200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:35085400-35086200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
41	chr11:35085400-35086400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:35085400-35086400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:35085400-35086400	Enhancers	Muscle Satellite Cultured Cells	--
44	chr11:35085400-35086600	Enhancers	NH-A	brain

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