Variant report

Variant	rs11165131
Chromosome Location	chr1:94853936-94853937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11165117	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11165119	1.00[YRI][hapmap]
rs12074537	1.00[AFR][1000 genomes]
rs12075352	1.00[AFR][1000 genomes]
rs12083189	1.00[AFR][1000 genomes]
rs12084996	1.00[AFR][1000 genomes]
rs12088515	1.00[AFR][1000 genomes]
rs12092580	1.00[YRI][hapmap]
rs12095472	1.00[AFR][1000 genomes]
rs12096080	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94846200-94854400	Enhancers	Fetal Intestine Small	intestine
2	chr1:94850000-94854000	Enhancers	Fetal Intestine Large	intestine
3	chr1:94851400-94854200	Enhancers	HepG2	liver
4	chr1:94851600-94854800	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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