Variant report

Variant	rs12092580
Chromosome Location	chr1:94818104-94818105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11165117	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11165118	1.00[AMR][1000 genomes]
rs11165119	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11165172	1.00[AMR][1000 genomes]
rs12058188	1.00[AMR][1000 genomes]
rs12074537	1.00[AMR][1000 genomes]
rs12075352	1.00[AMR][1000 genomes]
rs12082460	1.00[AMR][1000 genomes]
rs12083189	1.00[AMR][1000 genomes]
rs12084989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084996	1.00[AMR][1000 genomes]
rs12088238	1.00[AMR][1000 genomes]
rs12088515	1.00[AMR][1000 genomes]
rs12089307	1.00[AMR][1000 genomes]
rs12093670	1.00[AMR][1000 genomes]
rs12095472	1.00[AMR][1000 genomes]
rs12096080	1.00[AMR][1000 genomes]
rs57793716	1.00[AMR][1000 genomes]
rs58526237	1.00[AMR][1000 genomes]
rs61600778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94814400-94821400	Enhancers	Fetal Thymus	thymus
2	chr1:94814600-94819000	Enhancers	Thymus	Thymus
3	chr1:94816800-94820400	Weak transcription	Liver	Liver
4	chr1:94818000-94818400	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links