The 2.0 version of rSNPBase

Variant report

Variant rs12089307
Chromosome Location chr1:94674212-94674213
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94634200-94675200 Weak transcription Rectal Smooth Muscle rectum
2 chr1:94640000-94684800 Weak transcription Spleen Spleen
3 chr1:94642400-94684600 Weak transcription Fetal Stomach stomach
4 chr1:94644800-94684400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:94645000-94687600 Weak transcription Pancreas Pancrea
6 chr1:94647200-94675800 Weak transcription Cortex derived primary cultured neurospheres brain
7 chr1:94647800-94676200 Weak transcription Small Intestine intestine
8 chr1:94649400-94684000 Weak transcription Right Ventricle heart
9 chr1:94649600-94680000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr1:94660400-94681000 Weak transcription Fetal Heart heart
11 chr1:94663200-94674600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr1:94666600-94674600 Strong transcription NHDF-Ad bronchial
13 chr1:94668400-94674400 Strong transcription NHEK skin
14 chr1:94668400-94674800 Weak transcription Aorta Aorta
15 chr1:94668400-94687000 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr1:94668600-94684400 Weak transcription Psoas Muscle Psoas
17 chr1:94668800-94699000 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr1:94669200-94681200 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr1:94669400-94676400 Genic enhancers HUVEC blood vessel
20 chr1:94669400-94687600 Weak transcription Gastric stomach
21 chr1:94669800-94675400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:94670000-94684000 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:94670400-94675600 Weak transcription HepG2 liver
24 chr1:94670400-94684400 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:94670600-94679200 Weak transcription NHLF lung
26 chr1:94670600-94684400 Weak transcription Fetal Kidney kidney
27 chr1:94670800-94674600 Weak transcription A549 lung
28 chr1:94670800-94675000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr1:94670800-94675800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr1:94670800-94686400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:94670800-94686400 Weak transcription Placenta Placenta
32 chr1:94672200-94678200 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr1:94672400-94674400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:94672400-94674800 Weak transcription Adipose Nuclei Adipose
35 chr1:94672600-94675800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr1:94673000-94674800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
37 chr1:94673200-94674600 Enhancers Liver Liver
38 chr1:94673400-94674400 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
39 chr1:94673400-94674400 Strong transcription Fetal Muscle Leg muscle
40 chr1:94673400-94674800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:94673400-94675600 Genic enhancers Muscle Satellite Cultured Cells --
42 chr1:94673400-94675600 Genic enhancers Osteobl bone
43 chr1:94673400-94675800 Genic enhancers HMEC breast
44 chr1:94673400-94678000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:94673600-94674400 Genic enhancers HSMM muscle
46 chr1:94673800-94675200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
47 chr1:94673800-94675200 Strong transcription NH-A brain
48 chr1:94673800-94676000 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr1:94673800-94680400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
50 chr1:94673800-94682800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015