Variant report

Variant	rs12082460
Chromosome Location	chr1:94750008-94750009
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11165117	1.00[AMR][1000 genomes]
rs11165118	1.00[AMR][1000 genomes]
rs11165119	1.00[AMR][1000 genomes]
rs12058188	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs12074537	1.00[AMR][1000 genomes]
rs12075352	1.00[AMR][1000 genomes]
rs12083189	1.00[AMR][1000 genomes]
rs12084989	1.00[AMR][1000 genomes]
rs12084996	1.00[AMR][1000 genomes]
rs12088238	1.00[AMR][1000 genomes]
rs12088515	1.00[AMR][1000 genomes]
rs12089307	1.00[AMR][1000 genomes]
rs12092580	1.00[AMR][1000 genomes]
rs12093670	1.00[AMR][1000 genomes]
rs12095472	1.00[AMR][1000 genomes]
rs12096080	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94738600-94750200	Weak transcription	Fetal Kidney	kidney
2	chr1:94738800-94750600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:94745200-94750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:94747200-94750200	Weak transcription	Stomach Mucosa	stomach
5	chr1:94747400-94750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:94747800-94750200	Weak transcription	Fetal Stomach	stomach
7	chr1:94748200-94750400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:94748800-94750200	Enhancers	NHDF-Ad	bronchial
9	chr1:94749200-94750800	Enhancers	Fetal Lung	lung
10	chr1:94749400-94751600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:94749600-94752800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:94749800-94750200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:94749800-94752800	Enhancers	HUVEC	blood vessel
14	chr1:94749800-94753000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:94750000-94750200	Enhancers	Osteobl	bone
16	chr1:94750000-94750400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
17	chr1:94750000-94750400	Enhancers	GM12878-XiMat	blood
18	chr1:94750000-94750600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:94750000-94750600	Enhancers	Fetal Heart	heart
20	chr1:94750000-94750800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr1:94750000-94751000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:94750000-94751800	Enhancers	NH-A	brain
23	chr1:94750000-94752400	Enhancers	HSMM	muscle
24	chr1:94750000-94752600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr1:94750000-94752600	Enhancers	HMEC	breast
26	chr1:94750000-94752800	Enhancers	NHEK	skin
27	chr1:94750000-94753000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:94750000-94753000	Enhancers	NHLF	lung

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