Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11165117	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11165118	1.00[AMR][1000 genomes]
rs11165119	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11165131	1.00[AFR][1000 genomes]
rs11165172	1.00[AMR][1000 genomes]
rs12058188	1.00[AMR][1000 genomes]
rs12074537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12075352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12082460	1.00[AMR][1000 genomes]
rs12083189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12084989	1.00[AMR][1000 genomes]
rs12084996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12088238	1.00[AMR][1000 genomes]
rs12088515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089307	1.00[AMR][1000 genomes]
rs12092580	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12093670	1.00[AMR][1000 genomes]
rs12096080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57793716	1.00[AMR][1000 genomes]
rs58526237	1.00[AMR][1000 genomes]
rs61600778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94814400-94821400	Enhancers	Fetal Thymus	thymus
2	chr1:94816800-94820400	Weak transcription	Liver	Liver
3	chr1:94819000-94820600	Weak transcription	Thymus	Thymus
4	chr1:94820000-94820800	Enhancers	HepG2	liver

Quick Search: