Variant report

Variant	rs11165320
Chromosome Location	chr1:95611905-95611906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:95607723..95611080-chr1:95611882..95614538,3	K562	blood:
2	chr1:95611101..95613756-chr1:95616137..95618732,3	K562	blood:
3	chr1:95582433..95583936-chr1:95610604..95613225,2	K562	blood:

Variant related genes	Relation type
ENSG00000271092	Chromatin interaction
ENSG00000152078	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10782998	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12035503	1.00[AMR][1000 genomes]
rs12406444	1.00[AMR][1000 genomes]
rs1998967	0.90[AFR][1000 genomes]
rs2391630	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs259358	1.00[YRI][hapmap]
rs6659370	1.00[YRI][hapmap]
rs6695720	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7365394	0.90[AFR][1000 genomes]
rs7517250	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520889	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526279	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532269	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540042	1.00[YRI][hapmap]
rs915502	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs915503	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv870669	chr1:95586773-95690269	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95584000-95629400	Weak transcription	Aorta	Aorta
2	chr1:95585400-95636800	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:95592800-95634200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:95592800-95661800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr1:95598600-95612400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:95598800-95633800	Weak transcription	Fetal Heart	heart
7	chr1:95600000-95650200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr1:95601200-95618400	Weak transcription	Pancreas	Pancrea
9	chr1:95601800-95633600	Weak transcription	HepG2	liver
10	chr1:95602200-95615400	Weak transcription	Ovary	ovary
11	chr1:95602200-95628000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr1:95602800-95628800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:95602800-95634200	Weak transcription	Left Ventricle	heart
14	chr1:95603000-95640800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr1:95604200-95630000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr1:95605600-95618000	Weak transcription	Fetal Lung	lung
17	chr1:95609000-95629000	Weak transcription	Fetal Intestine Small	intestine
18	chr1:95609800-95612000	Strong transcription	Liver	Liver
19	chr1:95610600-95620200	Strong transcription	K562	blood
20	chr1:95610600-95628200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr1:95611000-95612800	Enhancers	Primary B cells from cord blood	blood
22	chr1:95611400-95628000	Weak transcription	Brain Anterior Caudate	brain
23	chr1:95611800-95612800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr1:95611800-95613800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:95611800-95630600	Weak transcription	A549	lung

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