Variant report

Variant	rs915502
Chromosome Location	chr1:95596111-95596112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10782998	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11165320	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12035503	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12406444	1.00[AMR][1000 genomes]
rs1998967	0.85[AFR][1000 genomes]
rs2391630	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6695720	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7365394	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7517250	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520889	0.87[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7526279	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7532269	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs915503	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv870669	chr1:95586773-95690269	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs915502	RWDD3	cis	multi-tissue	Pritchard

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95584000-95629400	Weak transcription	Aorta	Aorta
2	chr1:95584400-95603400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:95584600-95602200	Weak transcription	Right Ventricle	heart
4	chr1:95585400-95636800	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:95588200-95596600	Weak transcription	Pancreas	Pancrea
6	chr1:95588200-95599600	Weak transcription	Gastric	stomach
7	chr1:95588200-95608000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:95588400-95597800	Weak transcription	Fetal Heart	heart
9	chr1:95590000-95611000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:95591800-95602800	Enhancers	Liver	Liver
11	chr1:95592800-95596600	Weak transcription	Left Ventricle	heart
12	chr1:95592800-95634200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:95592800-95661800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:95594600-95598000	Weak transcription	HepG2	liver
15	chr1:95594600-95610600	Weak transcription	A549	lung
16	chr1:95594800-95602400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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