Variant report

Variant	rs1116686
Chromosome Location	chr12:11778296-11778297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1075239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11054377	0.90[ASN][1000 genomes]
rs11833870	0.86[ASN][1000 genomes]
rs12099745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58572989	0.88[ASN][1000 genomes]
rs59053741	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7294361	1.00[EUR][1000 genomes]
rs7294487	1.00[EUR][1000 genomes]
rs73286648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7957687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898803	chr12:11757867-11794636	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv470267	chr12:11767406-11787989	Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:11776600-11786400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:11776800-11781400	Weak transcription	HepG2	liver
3	chr12:11776800-11782200	Weak transcription	Thymus	Thymus
4	chr12:11776800-11782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:11777000-11782200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:11777000-11788200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:11777200-11782200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr12:11777200-11782600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr12:11777200-11782600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr12:11777200-11782800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr12:11778200-11780600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:11778200-11780800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links