Variant report

Variant	rs11167576
Chromosome Location	chr5:151681096-151681097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10064093	0.97[AFR][1000 genomes]
rs10064171	0.96[AFR][1000 genomes]
rs10223235	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477015	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477016	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11167577	0.82[ASN][1000 genomes]
rs1422361	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833649	0.96[AFR][1000 genomes]
rs1833652	0.81[AFR][1000 genomes]
rs1922667	0.84[AFR][1000 genomes]
rs4034960	0.82[AFR][1000 genomes]
rs62394477	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62394500	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7709568	0.84[AFR][1000 genomes]
rs918462	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9324725	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151679600-151681400	Enhancers	Ovary	ovary
2	chr5:151680800-151681400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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