Variant report
Variant | rs9324725 |
---|---|
Chromosome Location | chr5:151739672-151739673 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10059148 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs1006969 | 0.83[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs10223235 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10477014 | 0.80[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs10477015 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10477016 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11167576 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs11954622 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs12110035 | 0.83[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs1422349 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs1422361 | 0.94[EUR][1000 genomes] |
rs1592895 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs2016865 | 0.83[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs2161291 | 0.83[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs4552577 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs4552578 | 0.81[AFR][1000 genomes] |
rs55655970 | 0.82[AFR][1000 genomes] |
rs61254880 | 0.82[AFR][1000 genomes] |
rs61579841 | 0.81[AFR][1000 genomes] |
rs62394477 | 0.94[EUR][1000 genomes] |
rs62394500 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs62394502 | 0.80[ASN][1000 genomes] |
rs62394507 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs6860799 | 0.80[ASN][1000 genomes] |
rs918460 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs918461 | 0.83[AFR][1000 genomes];0.80[ASN][1000 genomes] |
rs918462 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1023828 | chr5:151522149-151956217 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv830519 | chr5:151588627-151800192 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv883048 | chr5:151682439-151846236 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv432814 | chr5:151682807-151852807 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv432815 | chr5:151682807-151875807 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv432816 | chr5:151691807-151875807 | Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | esv2763511 | chr5:151737559-151776755 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:151738400-151739800 | Enhancers | Fetal Stomach | stomach |
2 | chr5:151738600-151739800 | Enhancers | Fetal Intestine Small | intestine |
3 | chr5:151739000-151740600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
4 | chr5:151739200-151740200 | Weak transcription | Fetal Heart | heart |