Variant report

Variant	rs6860799
Chromosome Location	chr5:151755462-151755463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10037446	0.83[EUR][1000 genomes]
rs10059148	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064093	0.86[EUR][1000 genomes]
rs10064171	0.85[EUR][1000 genomes]
rs1006969	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10214018	0.84[EUR][1000 genomes]
rs10214020	0.84[EUR][1000 genomes]
rs10223089	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10223235	0.80[ASN][1000 genomes]
rs10477014	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477015	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10477016	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11167575	0.81[EUR][1000 genomes]
rs11954622	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12110035	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187043	0.84[EUR][1000 genomes]
rs12187221	0.84[EUR][1000 genomes]
rs13154938	0.84[EUR][1000 genomes]
rs13154974	0.84[EUR][1000 genomes]
rs13155261	0.84[EUR][1000 genomes]
rs13172915	0.84[EUR][1000 genomes]
rs13173220	0.84[EUR][1000 genomes]
rs13180768	0.84[EUR][1000 genomes]
rs1422349	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1592895	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833649	0.86[EUR][1000 genomes]
rs1833652	0.84[EUR][1000 genomes]
rs1862285	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1862393	0.83[EUR][1000 genomes]
rs1862394	0.83[EUR][1000 genomes]
rs1862395	0.84[EUR][1000 genomes]
rs1862396	0.84[EUR][1000 genomes]
rs1862397	0.84[EUR][1000 genomes]
rs1895323	0.84[EUR][1000 genomes]
rs1922667	0.86[EUR][1000 genomes]
rs1922668	0.84[EUR][1000 genomes]
rs1922669	0.84[EUR][1000 genomes]
rs2016865	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042204	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2161291	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194143	0.84[EUR][1000 genomes]
rs2194144	0.84[EUR][1000 genomes]
rs2216643	0.84[EUR][1000 genomes]
rs2216644	0.84[EUR][1000 genomes]
rs35868344	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4034960	0.84[EUR][1000 genomes]
rs4034961	0.84[EUR][1000 genomes]
rs4034962	0.84[EUR][1000 genomes]
rs4034965	0.86[EUR][1000 genomes]
rs4273593	0.82[EUR][1000 genomes]
rs4552577	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4552578	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4569858	0.84[EUR][1000 genomes]
rs4958301	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55655970	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61254880	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61579841	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62394475	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62394500	0.80[ASN][1000 genomes]
rs62394502	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394507	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6866565	0.81[EUR][1000 genomes]
rs6867177	0.82[EUR][1000 genomes]
rs6876527	0.84[EUR][1000 genomes]
rs6882001	0.84[EUR][1000 genomes]
rs7709568	0.84[EUR][1000 genomes]
rs7709598	0.84[EUR][1000 genomes]
rs7709605	0.84[EUR][1000 genomes]
rs7709816	0.84[EUR][1000 genomes]
rs7709990	0.84[EUR][1000 genomes]
rs7729379	0.84[EUR][1000 genomes]
rs918460	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs918461	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs918462	0.80[ASN][1000 genomes]
rs9324725	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2763511	chr5:151737559-151776755	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151753800-151756800	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr5:151754400-151755600	Active TSS	Brain Hippocampus Middle	brain
3	chr5:151754600-151755600	Active TSS	Brain Angular Gyrus	brain
4	chr5:151754600-151757200	Active TSS	Brain Anterior Caudate	brain
5	chr5:151755000-151756400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:151755400-151755600	Active TSS	Brain Cingulate Gyrus	brain
7	chr5:151755400-151756400	Flanking Active TSS	Brain Substantia Nigra	brain

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