Variant report

Variant	rs10223235
Chromosome Location	chr5:151738746-151738747
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151732642..151735217-chr5:151736155..151738969,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10059148	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1006969	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10477014	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs10477015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10477016	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167576	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11954622	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12110035	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1422349	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1422361	0.94[EUR][1000 genomes]
rs1592895	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2016865	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs2161291	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4552577	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4552578	0.81[AFR][1000 genomes]
rs55655970	0.82[AFR][1000 genomes]
rs61254880	0.82[AFR][1000 genomes]
rs61579841	0.81[AFR][1000 genomes]
rs62394477	0.94[EUR][1000 genomes]
rs62394500	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394502	0.80[ASN][1000 genomes]
rs62394507	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6860799	0.80[ASN][1000 genomes]
rs918460	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs918461	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs918462	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9324725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830519	chr5:151588627-151800192	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883048	chr5:151682439-151846236	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv432814	chr5:151682807-151852807	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv432815	chr5:151682807-151875807	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv432816	chr5:151691807-151875807	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2763511	chr5:151737559-151776755	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151737400-151739000	Enhancers	Placenta	Placenta
2	chr5:151738400-151738800	Enhancers	Stomach Mucosa	stomach
3	chr5:151738400-151739200	Enhancers	Fetal Heart	heart
4	chr5:151738400-151739800	Enhancers	Fetal Stomach	stomach
5	chr5:151738600-151738800	Enhancers	Ovary	ovary
6	chr5:151738600-151739600	Enhancers	Fetal Intestine Large	intestine
7	chr5:151738600-151739800	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links