Variant report

Variant	rs11167697
Chromosome Location	chr5:154023975-154023976
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11167698	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12652072	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1811291	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1972616	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28794278	0.84[ASN][1000 genomes]
rs4958753	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58514953	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59189695	0.89[ASN][1000 genomes]
rs7444282	0.82[ASN][1000 genomes]
rs7445576	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv3471583	chr5:154016315-154024233	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3471584	chr5:154016315-154024233	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv8777	chr5:154016328-154024317	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154020200-154025400	Enhancers	Liver	Liver
2	chr5:154020400-154025200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:154022200-154026600	Enhancers	HepG2	liver
4	chr5:154022600-154026600	Weak transcription	K562	blood
5	chr5:154023400-154026200	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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