Variant report

Variant	rs1811291
Chromosome Location	chr5:154028817-154028818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154026316..154028892-chr5:154135957..154138460,3	K562	blood:
2	chr5:154026946..154029914-chr5:154142078..154144700,2	K562	blood:
3	chr5:154025141..154035158-chr5:154131407..154139853,27	K562	blood:
4	chr5:154028334..154034938-chr5:154133035..154137591,9	MCF-7	breast:
5	chr5:154027746..154032720-chr5:154236442..154239837,5	MCF-7	breast:
6	chr5:154027659..154031934-chr5:154132640..154136119,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10875591	0.82[ASN][1000 genomes]
rs11167697	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11167698	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12515092	0.82[ASN][1000 genomes]
rs12652072	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1972616	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2396995	0.82[ASN][1000 genomes]
rs28794278	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4958753	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58514953	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs59189695	0.88[ASN][1000 genomes]
rs72797553	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7444282	0.88[ASN][1000 genomes]
rs7445576	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154027200-154032600	Weak transcription	NHLF	lung
2	chr5:154027400-154029200	Enhancers	Fetal Intestine Small	intestine
3	chr5:154027400-154029800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:154027400-154029800	Enhancers	Liver	Liver
5	chr5:154027400-154029800	Enhancers	Fetal Intestine Large	intestine
6	chr5:154027400-154032400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:154027400-154032400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:154027400-154032600	Weak transcription	HMEC	breast
9	chr5:154027400-154032800	Weak transcription	Right Ventricle	heart
10	chr5:154027400-154033600	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:154027400-154033600	Weak transcription	Osteobl	bone
12	chr5:154027400-154034600	Weak transcription	Lung	lung
13	chr5:154027600-154029800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:154027600-154030000	Weak transcription	Fetal Thymus	thymus
15	chr5:154027600-154032400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:154027600-154032600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:154027600-154032600	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr5:154027600-154032800	Weak transcription	Colonic Mucosa	Colon
19	chr5:154027600-154033200	Weak transcription	Spleen	Spleen
20	chr5:154027600-154033400	Weak transcription	Fetal Lung	lung
21	chr5:154027600-154033800	Weak transcription	NHDF-Ad	bronchial
22	chr5:154027800-154029200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:154027800-154029800	Enhancers	Stomach Mucosa	stomach
24	chr5:154027800-154029800	Enhancers	HepG2	liver
25	chr5:154027800-154032600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:154027800-154032600	Weak transcription	NHEK	skin
27	chr5:154027800-154032800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr5:154027800-154033200	Weak transcription	GM12878-XiMat	blood
29	chr5:154028000-154029800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:154028000-154032600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:154028000-154032800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr5:154028000-154033000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr5:154028000-154033200	Weak transcription	Right Atrium	heart
34	chr5:154028200-154029000	Weak transcription	Adipose Nuclei	Adipose
35	chr5:154028200-154029800	Enhancers	Hela-S3	cervix
36	chr5:154028200-154032200	Weak transcription	Pancreas	Pancrea
37	chr5:154028200-154032600	Weak transcription	Gastric	stomach
38	chr5:154028400-154032600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:154028400-154032800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:154028400-154032800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr5:154028600-154029800	Enhancers	Duodenum Mucosa	Duodenum
42	chr5:154028600-154029800	Enhancers	K562	blood
43	chr5:154028600-154032400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr5:154028600-154032400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr5:154028600-154033400	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr5:154028800-154029000	Enhancers	Rectal Mucosa Donor 29	rectum

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