Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11167698	0.86[ASN][1000 genomes]
rs12515092	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12652072	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs1811291	0.82[ASN][1000 genomes]
rs1972616	0.86[ASN][1000 genomes]
rs2396995	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28794278	0.89[ASN][1000 genomes]
rs4958382	0.89[CHB][hapmap];0.81[AMR][1000 genomes]
rs4958753	0.80[ASN][1000 genomes]
rs4958758	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4958759	0.84[CHB][hapmap];0.81[AMR][1000 genomes]
rs4958761	0.83[CHB][hapmap]
rs59189695	0.80[ASN][1000 genomes]
rs6580099	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72797553	0.80[ASN][1000 genomes]
rs7444282	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7445576	0.86[ASN][1000 genomes]
rs918365	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9324791	0.87[CHB][hapmap]
rs965235	0.88[CHB][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv462491	chr5:154045280-154066205	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv600090	chr5:154045280-154066205	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154042800-154061600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154048600-154062000	Weak transcription	Right Atrium	heart
3	chr5:154053000-154053600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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