Variant report

Variant	rs4958759
Chromosome Location	chr5:154065496-154065497
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154059219..154066449-chr5:154131053..154139153,28	MCF-7	breast:
2	chr5:154059571..154067369-chr5:154132796..154138140,13	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10039709	0.84[CHB][hapmap];0.81[EUR][1000 genomes]
rs10051493	0.82[ASN][1000 genomes]
rs10074675	0.81[EUR][1000 genomes]
rs10875591	0.81[AMR][1000 genomes]
rs1862130	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1862131	0.86[EUR][1000 genomes]
rs1972618	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2052448	0.82[EUR][1000 genomes]
rs2396995	0.80[AMR][1000 genomes]
rs3893695	0.81[EUR][1000 genomes]
rs4958382	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4958384	0.82[EUR][1000 genomes]
rs4958385	0.81[EUR][1000 genomes]
rs4958387	0.81[EUR][1000 genomes]
rs4958758	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4958760	0.82[CHB][hapmap];0.86[EUR][1000 genomes]
rs4958761	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958762	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs4958765	0.84[CHB][hapmap]
rs6580099	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6580102	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580103	0.82[EUR][1000 genomes]
rs6580104	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580107	0.82[EUR][1000 genomes]
rs6580108	0.83[AMR][1000 genomes]
rs6580109	0.82[AMR][1000 genomes]
rs6580111	0.81[EUR][1000 genomes]
rs6868098	0.84[EUR][1000 genomes]
rs749777	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7715775	0.82[EUR][1000 genomes]
rs7721183	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7736062	0.81[EUR][1000 genomes]
rs918365	0.85[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9324791	0.94[CHB][hapmap];0.83[EUR][1000 genomes]
rs9324792	0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs965235	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462491	chr5:154045280-154066205	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv600090	chr5:154045280-154066205	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154060800-154070000	Weak transcription	Gastric	stomach
2	chr5:154063000-154065600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:154063000-154069600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:154063400-154065800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr5:154063600-154065600	Weak transcription	A549	lung
6	chr5:154063600-154065800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:154063600-154066200	Enhancers	Liver	Liver
8	chr5:154063600-154066200	Weak transcription	Colonic Mucosa	Colon
9	chr5:154063600-154067200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:154063600-154069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:154063800-154065600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:154063800-154066000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:154063800-154071200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:154064200-154065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:154064400-154066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:154064400-154067600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:154064400-154071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:154064400-154071000	Weak transcription	Psoas Muscle	Psoas
19	chr5:154064600-154070800	Weak transcription	Right Atrium	heart
20	chr5:154064600-154070800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:154064800-154066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:154064800-154066800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr5:154065200-154070800	Weak transcription	Pancreas	Pancrea
24	chr5:154065200-154070800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr5:154065400-154065800	Weak transcription	Left Ventricle	heart

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