Variant report

Variant	rs918365
Chromosome Location	chr5:154060180-154060181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154059219..154066449-chr5:154131053..154139153,28	MCF-7	breast:
2	chr5:154059571..154067369-chr5:154132796..154138140,13	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10039709	0.80[CEU][hapmap]
rs10875591	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11167698	0.82[ASN][1000 genomes]
rs12515092	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12652072	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1862130	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1972616	0.81[ASN][1000 genomes]
rs2396995	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28794278	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs4958382	0.90[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4958758	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958759	0.85[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4958761	0.80[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6580099	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6868098	0.80[CEU][hapmap]
rs7444282	0.86[ASN][1000 genomes]
rs7445576	0.82[ASN][1000 genomes]
rs749777	0.80[CEU][hapmap]
rs9324791	0.88[CHB][hapmap]
rs9324792	0.80[CEU][hapmap]
rs965235	0.80[CEU][hapmap];0.89[CHB][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462491	chr5:154045280-154066205	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv600090	chr5:154045280-154066205	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154042800-154061600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154048600-154062000	Weak transcription	Right Atrium	heart
3	chr5:154054000-154062000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr5:154057800-154061600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:154057800-154061600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:154057800-154061600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:154057800-154061600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:154057800-154061600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:154057800-154061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:154057800-154061600	Weak transcription	Fetal Heart	heart
11	chr5:154057800-154061600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:154057800-154061800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:154057800-154061800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:154057800-154062000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:154058000-154061600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:154058000-154061600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:154058000-154061600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:154058000-154061600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:154058000-154061600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:154058000-154061600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr5:154058000-154061800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr5:154059200-154061000	Weak transcription	K562	blood
23	chr5:154059400-154062000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr5:154059800-154060400	Flanking Active TSS	HepG2	liver
25	chr5:154059800-154061800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:154059800-154061800	Weak transcription	Esophagus	oesophagus
27	chr5:154059800-154062000	Weak transcription	Pancreas	Pancrea

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