Variant report

Variant	rs9324792
Chromosome Location	chr5:154078564-154078565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154070363..154074948-chr5:154077094..154079891,5	MCF-7	breast:
2	chr5:154063702..154067436-chr5:154075469..154079111,4	MCF-7	breast:
3	chr5:154076467..154079281-chr5:154133937..154136676,3	MCF-7	breast:
4	chr5:154062083..154065077-chr5:154078214..154080372,2	K562	blood:

Variant related genes	Relation type
ENSG00000221552	Chromatin interaction
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10039709	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10051493	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10058604	0.88[ASN][1000 genomes]
rs10073561	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10074675	0.81[EUR][1000 genomes]
rs1972618	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2052448	0.82[EUR][1000 genomes]
rs3893695	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4117784	0.83[CHD][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.91[ASN][1000 genomes]
rs4958382	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4958384	0.82[EUR][1000 genomes]
rs4958385	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs4958387	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4958759	0.84[CHB][hapmap];0.83[EUR][1000 genomes]
rs4958760	0.85[CHB][hapmap]
rs4958761	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs4958762	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs4958765	0.89[CHB][hapmap];0.89[CHD][hapmap];0.96[GIH][hapmap];0.86[LWK][hapmap];0.95[ASN][1000 genomes]
rs4958767	0.84[ASN][1000 genomes]
rs6580102	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580103	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6580104	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580107	0.82[EUR][1000 genomes]
rs6580108	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580109	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6580110	0.87[EUR][1000 genomes]
rs6580111	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6868098	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6878543	0.85[AMR][1000 genomes]
rs749777	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7710331	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7715775	0.82[EUR][1000 genomes]
rs7721183	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7723991	0.80[EUR][1000 genomes]
rs7736062	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs918365	0.80[CEU][hapmap]
rs9324791	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs965235	1.00[CEU][hapmap];0.88[CHD][hapmap];0.90[GIH][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:154072200-154080600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr5:154072200-154080600	Weak transcription	Stomach Mucosa	stomach
4	chr5:154072200-154081000	Weak transcription	Left Ventricle	heart
5	chr5:154072200-154082800	Weak transcription	Psoas Muscle	Psoas
6	chr5:154072200-154092600	Weak transcription	Adipose Nuclei	Adipose
7	chr5:154072400-154091800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr5:154076000-154078800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:154076200-154079200	Enhancers	Fetal Intestine Small	intestine
12	chr5:154077000-154078800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:154077200-154078600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr5:154077200-154080600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:154077200-154080600	Weak transcription	K562	blood
16	chr5:154077200-154091600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:154077400-154081000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:154077400-154081800	Enhancers	Liver	Liver
19	chr5:154077400-154091800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr5:154077400-154091800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr5:154077600-154080200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:154077600-154080600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:154077600-154080800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr5:154077600-154080800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr5:154077600-154081000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:154077800-154090400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr5:154078200-154078600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr5:154078200-154078600	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr5:154078200-154078800	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr5:154078200-154078800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:154078200-154079000	Enhancers	Fetal Intestine Large	intestine
32	chr5:154078400-154078800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr5:154078400-154078800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr5:154078400-154078800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:154078400-154078800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:154078400-154078800	Flanking Active TSS	HepG2	liver
37	chr5:154078400-154078800	Enhancers	NH-A	brain
38	chr5:154078400-154078800	Flanking Active TSS	Osteobl	bone
39	chr5:154078400-154079000	Enhancers	Fetal Heart	heart

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