Variant report

Variant	rs6580103
Chromosome Location	chr5:154070168-154070169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154069246..154072134-chr5:154161988..154164384,2	K562	blood:
2	chr5:154064183..154068335-chr5:154068405..154072941,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000221552	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10039709	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs10043507	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10070709	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10070715	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10074675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13186046	0.87[EUR][1000 genomes]
rs1862131	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1972618	0.83[EUR][1000 genomes]
rs2052448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3893695	0.80[EUR][1000 genomes]
rs4958382	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs4958384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4958385	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4958387	0.80[EUR][1000 genomes]
rs4958759	0.82[EUR][1000 genomes]
rs4958760	0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958761	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4958762	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6580100	0.82[ASN][1000 genomes]
rs6580101	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580102	0.85[EUR][1000 genomes]
rs6580104	0.84[EUR][1000 genomes]
rs6580107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580111	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs6868098	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs6897388	0.89[EUR][1000 genomes]
rs749777	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7715775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721183	0.84[EUR][1000 genomes]
rs7723991	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7727616	0.85[ASN][1000 genomes]
rs7735337	0.87[EUR][1000 genomes]
rs7736062	0.80[EUR][1000 genomes]
rs9324791	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs9324792	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs965235	0.89[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154063800-154071200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154064400-154071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:154064400-154071000	Weak transcription	Psoas Muscle	Psoas
4	chr5:154064600-154070800	Weak transcription	Right Atrium	heart
5	chr5:154064600-154070800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr5:154065200-154070800	Weak transcription	Pancreas	Pancrea
7	chr5:154065200-154070800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:154066000-154070200	Weak transcription	Left Ventricle	heart
9	chr5:154066400-154071800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:154066600-154070600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:154066600-154070800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:154066600-154070800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:154066600-154071000	Weak transcription	Colonic Mucosa	Colon
14	chr5:154066600-154071000	Weak transcription	NHLF	lung
15	chr5:154066800-154070800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:154067000-154070800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:154069400-154070200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:154069400-154070800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:154069600-154071000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr5:154069600-154071200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:154070000-154070200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr5:154070000-154070200	Enhancers	Gastric	stomach
23	chr5:154070000-154070600	Enhancers	Fetal Heart	heart
24	chr5:154070000-154070800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:154070000-154070800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:154070000-154070800	Enhancers	Placenta	Placenta
27	chr5:154070000-154071000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:154070000-154071600	Active TSS	iPS-15b Cell Line	embryonic stem cell

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