Variant report

Variant	rs4958762
Chromosome Location	chr5:154066205-154066206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154059219..154066449-chr5:154131053..154139153,28	MCF-7	breast:
2	chr5:154062816..154065132-chr5:154065984..154069776,3	MCF-7	breast:
3	chr5:154060708..154062713-chr5:154065888..154067569,2	MCF-7	breast:
4	chr5:154059571..154067369-chr5:154132796..154138140,13	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10039709	0.85[CHB][hapmap]
rs10043507	0.81[AMR][1000 genomes]
rs10070709	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10070715	0.83[AMR][1000 genomes]
rs10074675	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1862130	0.81[EUR][1000 genomes]
rs1862131	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052448	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4958382	0.86[EUR][1000 genomes]
rs4958384	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4958385	0.85[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4958759	0.81[CHB][hapmap];0.84[EUR][1000 genomes]
rs4958760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958761	0.81[CHB][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs4958765	0.85[CHB][hapmap]
rs6580100	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580101	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6580103	0.85[CEU][hapmap];0.90[CHB][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6580107	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6868098	0.80[CHB][hapmap]
rs749777	0.85[CHB][hapmap]
rs7715775	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7723991	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7727616	0.98[ASN][1000 genomes]
rs9324792	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs965235	0.84[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462491	chr5:154045280-154066205	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv600090	chr5:154045280-154066205	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154060800-154070000	Weak transcription	Gastric	stomach
2	chr5:154063000-154069600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:154063600-154067200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:154063600-154069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:154063800-154071200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:154064400-154066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:154064400-154067600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:154064400-154071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:154064400-154071000	Weak transcription	Psoas Muscle	Psoas
10	chr5:154064600-154070800	Weak transcription	Right Atrium	heart
11	chr5:154064600-154070800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr5:154064800-154066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:154064800-154066800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
14	chr5:154065200-154070800	Weak transcription	Pancreas	Pancrea
15	chr5:154065200-154070800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:154065600-154066600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr5:154065600-154066600	ZNF genes & repeats	A549	lung
18	chr5:154065800-154066400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:154065800-154066400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
20	chr5:154065800-154066800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
21	chr5:154065800-154066800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:154066000-154066600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
23	chr5:154066000-154069400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:154066000-154070200	Weak transcription	Left Ventricle	heart
25	chr5:154066200-154066600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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