Variant report

Variant	rs4958761
Chromosome Location	chr5:154065895-154065896
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154059219..154066449-chr5:154131053..154139153,28	MCF-7	breast:
2	chr5:154060708..154062713-chr5:154065888..154067569,2	MCF-7	breast:
3	chr5:154059571..154067369-chr5:154132796..154138140,13	K562	blood:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10039709	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs10051493	0.82[ASN][1000 genomes]
rs10074675	0.82[EUR][1000 genomes]
rs1862130	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1862131	0.88[EUR][1000 genomes]
rs1972618	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2052448	0.82[EUR][1000 genomes]
rs2396995	0.80[AMR][1000 genomes]
rs3893695	0.82[EUR][1000 genomes]
rs4117784	0.84[GIH][hapmap]
rs4958382	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4958384	0.82[EUR][1000 genomes]
rs4958385	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs4958387	0.82[EUR][1000 genomes]
rs4958758	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4958759	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958760	0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs4958762	0.81[CHB][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs4958765	0.84[CHB][hapmap];0.87[GIH][hapmap]
rs6580099	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6580101	0.80[EUR][1000 genomes]
rs6580102	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580103	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6580104	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580107	0.82[EUR][1000 genomes]
rs6580108	0.81[AMR][1000 genomes]
rs6580111	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6868098	1.00[CEU][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs749777	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7715775	0.82[EUR][1000 genomes]
rs7721183	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7736062	0.82[EUR][1000 genomes]
rs918365	0.80[CEU][hapmap];0.84[CHB][hapmap];0.83[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9324791	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[EUR][1000 genomes]
rs9324792	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.83[TSI][hapmap];0.84[EUR][1000 genomes]
rs965235	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462491	chr5:154045280-154066205	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv600090	chr5:154045280-154066205	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154060800-154070000	Weak transcription	Gastric	stomach
2	chr5:154063000-154069600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:154063600-154066200	Enhancers	Liver	Liver
4	chr5:154063600-154066200	Weak transcription	Colonic Mucosa	Colon
5	chr5:154063600-154067200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:154063600-154069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:154063800-154066000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr5:154063800-154071200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:154064400-154066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:154064400-154067600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:154064400-154071000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr5:154064400-154071000	Weak transcription	Psoas Muscle	Psoas
13	chr5:154064600-154070800	Weak transcription	Right Atrium	heart
14	chr5:154064600-154070800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr5:154064800-154066600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:154064800-154066800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
17	chr5:154065200-154070800	Weak transcription	Pancreas	Pancrea
18	chr5:154065200-154070800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:154065600-154066000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:154065600-154066600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:154065600-154066600	ZNF genes & repeats	A549	lung
22	chr5:154065800-154066000	Enhancers	Left Ventricle	heart
23	chr5:154065800-154066400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:154065800-154066400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr5:154065800-154066800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr5:154065800-154066800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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