Variant report

Variant	rs4958384
Chromosome Location	chr5:154071775-154071776
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:154070363..154074948-chr5:154077094..154079891,5	MCF-7	breast:
2	chr5:154069246..154072134-chr5:154161988..154164384,2	K562	blood:
3	chr5:154071071..154073621-chr5:154134950..154138665,3	MCF-7	breast:
4	chr5:154064183..154068335-chr5:154068405..154072941,6	MCF-7	breast:
5	chr5:154070984..154071932-chr7:100033496..100034227,2	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP1-1	chr5:154070884-154073825	NONHSAT104708

No data

Variant related genes	Relation type
ENSG00000160813	Chromatin interaction
ENSG00000240211	Chromatin interaction
ENSG00000155506	Chromatin interaction
ENSG00000221552	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10039709	0.80[EUR][1000 genomes]
rs10043507	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10070709	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10070715	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10074675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13186046	0.87[EUR][1000 genomes]
rs1862131	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1972618	0.83[EUR][1000 genomes]
rs2052448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3893695	0.80[EUR][1000 genomes]
rs4958382	0.82[EUR][1000 genomes]
rs4958385	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958387	0.80[EUR][1000 genomes]
rs4958759	0.82[EUR][1000 genomes]
rs4958760	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4958761	0.82[EUR][1000 genomes]
rs4958762	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6580100	0.82[ASN][1000 genomes]
rs6580101	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580102	0.85[EUR][1000 genomes]
rs6580103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580104	0.84[EUR][1000 genomes]
rs6580107	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580111	0.80[EUR][1000 genomes]
rs6868098	0.83[EUR][1000 genomes]
rs6897388	0.89[EUR][1000 genomes]
rs749777	0.82[EUR][1000 genomes]
rs7715775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7721183	0.84[EUR][1000 genomes]
rs7723991	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727616	0.84[ASN][1000 genomes]
rs7735337	0.87[EUR][1000 genomes]
rs7736062	0.80[EUR][1000 genomes]
rs9324791	0.82[EUR][1000 genomes]
rs9324792	0.82[EUR][1000 genomes]
rs965235	0.82[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154066400-154071800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:154070800-154071800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr5:154070800-154071800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:154070800-154071800	Flanking Active TSS	Placenta	Placenta
5	chr5:154070800-154072200	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr5:154070800-154072200	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr5:154070800-154072400	Flanking Active TSS	Hela-S3	cervix
8	chr5:154070800-154072400	Enhancers	HMEC	breast
9	chr5:154071000-154071800	Active TSS	H9 Cell Line	embryonic stem cell
10	chr5:154071000-154071800	Enhancers	Spleen	Spleen
11	chr5:154071000-154072000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:154071000-154072000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr5:154071000-154072000	Active TSS	Fetal Kidney	kidney
14	chr5:154071000-154072200	Enhancers	Brain Cingulate Gyrus	brain
15	chr5:154071000-154072200	Enhancers	NHLF	lung
16	chr5:154071000-154072400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:154071000-154072400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr5:154071000-154072400	Enhancers	Lung	lung
19	chr5:154071000-154072400	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr5:154071200-154072200	Enhancers	Left Ventricle	heart
21	chr5:154071200-154072200	Enhancers	HUVEC	blood vessel
22	chr5:154071200-154072400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:154071200-154072400	Enhancers	Fetal Heart	heart
24	chr5:154071200-154072600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr5:154071200-154072600	Enhancers	NHDF-Ad	bronchial
26	chr5:154071200-154076200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:154071400-154071800	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr5:154071400-154071800	Bivalent Enhancer	Fetal Stomach	stomach
29	chr5:154071400-154071800	Enhancers	Ovary	ovary
30	chr5:154071400-154071800	Enhancers	Pancreas	Pancrea
31	chr5:154071400-154071800	Enhancers	Rectal Smooth Muscle	rectum
32	chr5:154071400-154071800	Enhancers	Stomach Smooth Muscle	stomach
33	chr5:154071400-154071800	Enhancers	NHEK	skin
34	chr5:154071400-154072000	Enhancers	Aorta	Aorta
35	chr5:154071400-154072000	Enhancers	Brain Hippocampus Middle	brain
36	chr5:154071400-154072000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr5:154071400-154072000	Weak transcription	Right Atrium	heart
38	chr5:154071400-154072200	Enhancers	Adipose Nuclei	Adipose
39	chr5:154071400-154072200	Enhancers	Brain Anterior Caudate	brain
40	chr5:154071400-154072200	Weak transcription	Gastric	stomach
41	chr5:154071400-154072200	Enhancers	Psoas Muscle	Psoas
42	chr5:154071400-154072200	Enhancers	Right Ventricle	heart
43	chr5:154071400-154072400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
44	chr5:154071400-154072400	Enhancers	H1 Cell Line	embryonic stem cell
45	chr5:154071400-154072400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr5:154071400-154072400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr5:154071400-154072400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr5:154071400-154072400	Enhancers	Esophagus	oesophagus
49	chr5:154071400-154077200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links