Variant report

Variant	rs7721183
Chromosome Location	chr5:154071033-154071034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154070363..154074948-chr5:154077094..154079891,5	MCF-7	breast:
2	chr5:154069246..154072134-chr5:154161988..154164384,2	K562	blood:
3	chr5:154064183..154068335-chr5:154068405..154072941,6	MCF-7	breast:
4	chr5:154070984..154071932-chr7:100033496..100034227,2	Hela-S3	cervix:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP1-1	chr5:154070884-154073825	NONHSAT104708

Variant related genes	Relation type
ENSG00000160813	Chromatin interaction
ENSG00000240211	Chromatin interaction
ENSG00000221552	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10039709	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10051493	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10058604	0.81[ASN][1000 genomes]
rs10070709	0.81[EUR][1000 genomes]
rs10073561	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10074675	0.83[EUR][1000 genomes]
rs1862130	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1972618	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2052448	0.84[EUR][1000 genomes]
rs3893695	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4117784	0.84[ASN][1000 genomes]
rs4958382	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4958384	0.84[EUR][1000 genomes]
rs4958385	0.83[EUR][1000 genomes]
rs4958387	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4958759	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4958761	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4958765	0.89[ASN][1000 genomes]
rs6580101	0.82[EUR][1000 genomes]
rs6580102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580103	0.84[EUR][1000 genomes]
rs6580104	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580107	0.84[EUR][1000 genomes]
rs6580108	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6580109	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580110	0.85[EUR][1000 genomes]
rs6580111	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6868098	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs749777	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7710331	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7715775	0.84[EUR][1000 genomes]
rs7736062	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9324791	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9324792	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs965235	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154063800-154071200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154066400-154071800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:154069600-154071200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:154070000-154071600	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr5:154070600-154071200	Weak transcription	Fetal Heart	heart
6	chr5:154070800-154071200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:154070800-154071200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr5:154070800-154071200	Flanking Active TSS	Left Ventricle	heart
9	chr5:154070800-154071400	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:154070800-154071400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:154070800-154071400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:154070800-154071400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:154070800-154071400	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr5:154070800-154071400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:154070800-154071400	Active TSS	Colon Smooth Muscle	Colon
16	chr5:154070800-154071400	Active TSS	Duodenum Mucosa	Duodenum
17	chr5:154070800-154071400	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr5:154070800-154071400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
19	chr5:154070800-154071400	Bivalent Enhancer	Fetal Brain Male	brain
20	chr5:154070800-154071400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr5:154070800-154071400	Flanking Active TSS	Ovary	ovary
22	chr5:154070800-154071400	Flanking Active TSS	Pancreas	Pancrea
23	chr5:154070800-154071400	Active TSS	Rectal Smooth Muscle	rectum
24	chr5:154070800-154071400	Active TSS	Right Atrium	heart
25	chr5:154070800-154071600	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr5:154070800-154071600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:154070800-154071800	Active TSS	ES-I3 Cell Line	embryonic stem cell
28	chr5:154070800-154071800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:154070800-154071800	Flanking Active TSS	Placenta	Placenta
30	chr5:154070800-154072200	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr5:154070800-154072200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr5:154070800-154072400	Flanking Active TSS	Hela-S3	cervix
33	chr5:154070800-154072400	Enhancers	HMEC	breast
34	chr5:154071000-154071200	Active TSS	Breast Myoepithelial Primary Cells	Breast
35	chr5:154071000-154071200	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:154071000-154071200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr5:154071000-154071200	Active TSS	Brain Germinal Matrix	brain
38	chr5:154071000-154071200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
39	chr5:154071000-154071200	Active TSS	Fetal Intestine Small	intestine
40	chr5:154071000-154071200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr5:154071000-154071200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
42	chr5:154071000-154071200	Flanking Active TSS	Gastric	stomach
43	chr5:154071000-154071200	Bivalent/Poised TSS	Thymus	Thymus
44	chr5:154071000-154071200	Flanking Active TSS	HUVEC	blood vessel
45	chr5:154071000-154071200	Flanking Active TSS	Osteobl	bone
46	chr5:154071000-154071400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr5:154071000-154071400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
48	chr5:154071000-154071400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr5:154071000-154071400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr5:154071000-154071400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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