Variant report

Variant	rs6868098
Chromosome Location	chr5:154080958-154080959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154080813..154083048-chr5:154129473..154132225,2	MCF-7	breast:
2	chr5:154079288..154081204-chr5:154124978..154126808,2	MCF-7	breast:
3	chr5:154079413..154083903-chr5:154131964..154138437,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10039709	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10051493	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10058604	0.89[ASN][1000 genomes]
rs10073561	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10074675	0.82[EUR][1000 genomes]
rs1972618	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2052448	0.83[EUR][1000 genomes]
rs3893695	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4117784	0.80[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.92[ASN][1000 genomes]
rs4958382	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs4958384	0.83[EUR][1000 genomes]
rs4958385	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs4958387	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4958759	0.84[EUR][1000 genomes]
rs4958760	0.80[CHB][hapmap]
rs4958761	1.00[CEU][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs4958762	0.80[CHB][hapmap]
rs4958765	0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes]
rs4958767	0.86[ASN][1000 genomes]
rs6580101	0.80[EUR][1000 genomes]
rs6580102	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580103	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs6580104	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580107	0.83[EUR][1000 genomes]
rs6580108	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6580109	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6580110	0.87[EUR][1000 genomes]
rs6580111	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6878543	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs749777	0.89[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7710331	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7715775	0.83[EUR][1000 genomes]
rs7721183	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7723991	0.81[EUR][1000 genomes]
rs7736062	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs918365	0.80[CEU][hapmap]
rs9324791	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9324792	1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs965235	1.00[CEU][hapmap];0.87[GIH][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:154072200-154081000	Weak transcription	Left Ventricle	heart
3	chr5:154072200-154082800	Weak transcription	Psoas Muscle	Psoas
4	chr5:154072200-154092600	Weak transcription	Adipose Nuclei	Adipose
5	chr5:154072400-154091800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:154077200-154091600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:154077400-154081000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr5:154077400-154081800	Enhancers	Liver	Liver
11	chr5:154077400-154091800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:154077400-154091800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:154077600-154081000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:154077800-154090400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr5:154078600-154081000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr5:154078800-154089400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:154079000-154081400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr5:154080000-154081800	Enhancers	Placenta	Placenta
19	chr5:154080200-154081000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr5:154080200-154081800	Enhancers	Pancreas	Pancrea
21	chr5:154080200-154082000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:154080600-154081200	Enhancers	Right Ventricle	heart
23	chr5:154080600-154081600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:154080600-154081800	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr5:154080600-154081800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:154080600-154081800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:154080600-154081800	Enhancers	Stomach Mucosa	stomach
28	chr5:154080600-154081800	Enhancers	Hela-S3	cervix
29	chr5:154080600-154081800	Flanking Active TSS	HepG2	liver
30	chr5:154080600-154081800	Enhancers	K562	blood
31	chr5:154080600-154082200	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr5:154080600-154082400	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr5:154080800-154081000	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr5:154080800-154081000	Enhancers	NH-A	brain
35	chr5:154080800-154081200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr5:154080800-154081200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr5:154080800-154081200	Weak transcription	Fetal Heart	heart
38	chr5:154080800-154081400	Enhancers	Fetal Intestine Small	intestine
39	chr5:154080800-154081600	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr5:154080800-154081600	Enhancers	Osteobl	bone
41	chr5:154080800-154081800	Enhancers	Gastric	stomach
42	chr5:154080800-154082200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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