Variant report

Variant	rs6878543
Chromosome Location	chr5:154082493-154082494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154080813..154083048-chr5:154129473..154132225,2	MCF-7	breast:
2	chr5:154081082..154084352-chr5:154105726..154108846,3	K562	blood:
3	chr5:154082225..154089110-chr5:154090425..154094066,7	MCF-7	breast:
4	chr5:154079413..154083903-chr5:154131964..154138437,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000241187	Chromatin interaction

rs_ID	r²[population]
rs10039709	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10051493	0.87[AMR][1000 genomes]
rs3893695	0.81[AMR][1000 genomes]
rs4958387	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4958765	0.82[ASN][1000 genomes]
rs6580111	0.80[AMR][1000 genomes]
rs6868098	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs749777	0.82[AMR][1000 genomes]
rs7736062	0.80[AMR][1000 genomes]
rs9324791	0.85[AMR][1000 genomes]
rs9324792	0.85[AMR][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:154072200-154082800	Weak transcription	Psoas Muscle	Psoas
3	chr5:154072200-154092600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:154072400-154091800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:154077200-154091600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:154077400-154091800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr5:154077400-154091800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:154077800-154090400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:154078800-154089400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:154081000-154082800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:154081400-154091800	Weak transcription	Fetal Intestine Small	intestine
14	chr5:154081600-154092000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr5:154081800-154084000	Enhancers	HepG2	liver
16	chr5:154081800-154084400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:154081800-154087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:154081800-154088000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:154081800-154088400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr5:154081800-154091800	Weak transcription	Esophagus	oesophagus
21	chr5:154082000-154082800	Weak transcription	Left Ventricle	heart
22	chr5:154082400-154091600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr5:154082400-154091800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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