Variant report

Variant	rs749777
Chromosome Location	chr5:154074270-154074271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:154070363..154074948-chr5:154077094..154079891,5	MCF-7	breast:
2	chr5:154061423..154063859-chr5:154072276..154076586,3	K562	blood:
3	chr5:154073729..154076379-chr5:154133995..154135635,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10039709	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10051493	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10058604	0.83[ASN][1000 genomes]
rs10073561	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10074675	0.81[EUR][1000 genomes]
rs1972618	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2052448	0.82[EUR][1000 genomes]
rs3893695	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4117784	0.80[CHD][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];0.86[LWK][hapmap];0.86[ASN][1000 genomes]
rs4958382	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4958384	0.82[EUR][1000 genomes]
rs4958385	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs4958387	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4958759	0.95[CHB][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4958760	0.85[CHB][hapmap]
rs4958761	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4958762	0.85[CHB][hapmap]
rs4958765	0.89[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs6580102	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6580103	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs6580104	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6580107	0.82[EUR][1000 genomes]
rs6580108	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6580109	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580110	0.87[EUR][1000 genomes]
rs6580111	1.00[CEU][hapmap];0.84[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6868098	0.89[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6878543	0.82[AMR][1000 genomes]
rs7710331	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7715775	0.82[EUR][1000 genomes]
rs7721183	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7723991	0.80[EUR][1000 genomes]
rs7736062	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs918365	0.80[CEU][hapmap]
rs9324791	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9324792	0.89[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs965235	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];0.87[GIH][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154071200-154076200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:154071400-154077200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:154071400-154093400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:154071600-154076000	Weak transcription	Fetal Intestine Large	intestine
5	chr5:154071600-154076200	Weak transcription	Fetal Intestine Small	intestine
6	chr5:154071800-154076000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:154072200-154076000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr5:154072200-154076200	Weak transcription	K562	blood
9	chr5:154072200-154080600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:154072200-154080600	Weak transcription	Stomach Mucosa	stomach
11	chr5:154072200-154081000	Weak transcription	Left Ventricle	heart
12	chr5:154072200-154082800	Weak transcription	Psoas Muscle	Psoas
13	chr5:154072200-154092600	Weak transcription	Adipose Nuclei	Adipose
14	chr5:154072400-154075600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:154072400-154075600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:154072400-154075600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:154072400-154075800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:154072400-154075800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:154072400-154076000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr5:154072400-154076000	Weak transcription	Fetal Heart	heart
21	chr5:154072400-154076800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr5:154072400-154076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:154072400-154076800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:154072400-154077400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr5:154072400-154078200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:154072400-154091800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr5:154072600-154075800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr5:154072600-154076400	Weak transcription	Osteobl	bone
29	chr5:154072600-154076800	Weak transcription	NHDF-Ad	bronchial
30	chr5:154072800-154076800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr5:154072800-154077000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:154073000-154075600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr5:154074200-154108600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr5:154074200-154120000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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