Variant report

Variant	rs11167698
Chromosome Location	chr5:154035016-154035017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154034090..154035820-chr5:154141862..154143840,2	K562	blood:
2	chr5:154032924..154035953-chr5:154060890..154064401,4	K562	blood:
3	chr5:154034077..154035807-chr5:154037417..154039966,2	K562	blood:
4	chr5:154029914..154035402-chr5:154132674..154138757,12	K562	blood:
5	chr5:154032959..154035476-chr5:154316214..154318624,2	MCF-7	breast:
6	chr5:154033358..154036952-chr5:154037115..154039646,4	K562	blood:
7	chr5:154025141..154035158-chr5:154131407..154139853,27	K562	blood:
8	chr5:154031990..154035477-chr5:154237089..154239415,3	K562	blood:
9	chr5:154033389..154035257-chr5:154121200..154122760,2	K562	blood:
10	chr5:154032586..154035890-chr5:154134130..154138220,4	MCF-7	breast:
11	chr5:154032703..154035820-chr5:154141862..154144774,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000155506	Chromatin interaction
ENSG00000082516	Chromatin interaction
ENSG00000155508	Chromatin interaction
ENSG00000170271	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10875591	0.86[ASN][1000 genomes]
rs11167697	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12515092	0.89[ASN][1000 genomes]
rs12652072	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1811291	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1972616	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2396995	0.86[ASN][1000 genomes]
rs28794278	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4958753	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4958758	0.82[ASN][1000 genomes]
rs59189695	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6580099	0.83[ASN][1000 genomes]
rs72797553	0.83[ASN][1000 genomes]
rs7444282	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7445576	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs918365	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401644	chr5:153898681-154058368	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154033200-154035200	Enhancers	Fetal Muscle Leg	muscle
2	chr5:154033400-154035200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:154033400-154035200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:154034400-154035200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr5:154034400-154035600	Enhancers	Primary hematopoietic stem cells	blood
6	chr5:154034600-154035200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr5:154034600-154035200	Enhancers	Lung	lung
8	chr5:154034600-154035200	Enhancers	Spleen	Spleen
9	chr5:154034800-154035200	Enhancers	Fetal Heart	heart
10	chr5:154034800-154035200	Enhancers	Fetal Muscle Trunk	muscle
11	chr5:154034800-154035400	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr5:154034800-154035400	Enhancers	HUVEC	blood vessel
13	chr5:154035000-154035200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:154035000-154035200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:154035000-154035200	Enhancers	K562	blood
16	chr5:154035000-154035600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:154035000-154040600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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