Variant report

Variant	rs11168307
Chromosome Location	chr12:48319663-48319664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:48303456..48306045-chr12:48319476..48321750,3	MCF-7	breast:
2	chr12:48116185..48118625-chr12:48317978..48320277,2	K562	blood:
3	chr12:48318671..48321191-chr12:48325244..48327910,3	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10747525	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10783221	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10875695	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs10875697	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10875700	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10875701	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10875702	0.94[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10875703	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10875704	0.94[CEU][hapmap];0.87[CHB][hapmap];0.92[EUR][1000 genomes]
rs10875705	0.87[CHB][hapmap];0.84[EUR][1000 genomes]
rs10875706	0.90[EUR][1000 genomes]
rs10875707	0.90[EUR][1000 genomes]
rs10875708	0.94[CEU][hapmap];0.82[CHB][hapmap];0.90[EUR][1000 genomes]
rs10875709	0.90[EUR][1000 genomes]
rs11168308	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11168310	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11168311	0.94[EUR][1000 genomes]
rs11168313	0.84[EUR][1000 genomes]
rs11168314	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11168315	0.94[CEU][hapmap];0.86[CHB][hapmap];0.89[EUR][1000 genomes]
rs11168316	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11168318	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11168319	0.88[EUR][1000 genomes]
rs11168320	0.90[EUR][1000 genomes]
rs11568820	0.94[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs11829292	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12304114	0.80[ASN][1000 genomes]
rs12306963	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12316950	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12831006	0.87[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34381446	0.84[EUR][1000 genomes]
rs4237855	0.87[CHB][hapmap]
rs4254129	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4402365	0.94[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4411326	0.94[CEU][hapmap];0.80[CHB][hapmap];0.91[EUR][1000 genomes]
rs4442605	0.94[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4454781	0.93[CEU][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61920869	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61920870	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7136534	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs71439418	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7300028	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7300088	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7300301	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7303966	0.94[CEU][hapmap];0.86[CHB][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7305180	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7308216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7970314	0.82[EUR][1000 genomes]
rs7975675	0.89[EUR][1000 genomes]
rs7976091	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428589	chr12:48282920-48341192	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48318800-48323000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr12:48319400-48320000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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