Variant report
| Variant | rs71439418 |
|---|---|
| Chromosome Location | chr12:48319325-48319326 |
| allele | CA/TG |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10783221 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10875703 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10875704 | 0.82[EUR][1000 genomes] |
| rs10875706 | 0.83[EUR][1000 genomes] |
| rs10875707 | 0.83[EUR][1000 genomes] |
| rs10875708 | 0.83[EUR][1000 genomes] |
| rs10875709 | 0.83[EUR][1000 genomes] |
| rs11168307 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11168308 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11168311 | 0.86[EUR][1000 genomes] |
| rs11168314 | 0.84[EUR][1000 genomes] |
| rs11168315 | 0.82[EUR][1000 genomes] |
| rs11168316 | 0.84[EUR][1000 genomes] |
| rs11168318 | 0.84[EUR][1000 genomes] |
| rs11168319 | 0.81[EUR][1000 genomes] |
| rs11168320 | 0.83[EUR][1000 genomes] |
| rs12316950 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4411326 | 0.81[EUR][1000 genomes] |
| rs61920870 | 0.84[EUR][1000 genomes] |
| rs7300028 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7300088 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7300301 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7303966 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7308216 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7975675 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428589 | chr12:48282920-48341192 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:48318800-48323000 | Weak transcription | Duodenum Mucosa | Duodenum |
