Variant report

Variant	rs7300028
Chromosome Location	chr12:48319326-48319327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10875703	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10875705	0.84[EUR][1000 genomes]
rs11168307	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168310	0.88[EUR][1000 genomes]
rs11168313	0.84[EUR][1000 genomes]
rs12306963	0.87[EUR][1000 genomes]
rs12316950	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12831006	0.87[EUR][1000 genomes]
rs34381446	0.84[EUR][1000 genomes]
rs61920869	0.86[EUR][1000 genomes]
rs71439418	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7300088	0.84[ASN][1000 genomes]
rs7300301	0.84[ASN][1000 genomes]
rs7308216	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428589	chr12:48282920-48341192	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48318800-48323000	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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