Variant report

Variant	rs11168414
Chromosome Location	chr12:48512331-48512332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr12:48512218-48512380	K562	blood:	n/a	n/a
2	POLR2A	chr12:48512215-48512513	Hela-S3	cervix:	n/a	n/a
3	TBP	chr12:48512231-48514177	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr12:48512252-48512534	K562	blood:	n/a	n/a
5	GATA1	chr12:48511733-48512570	PBDE	blood:	n/a	n/a
6	POLR2A	chr12:48512225-48512534	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr12:48512281-48514029	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr12:48512108-48513729	H1-hESC	embryonic stem cell:	n/a	n/a
9	MXI1	chr12:48512103-48514432	SK-N-SH	brain:	n/a	n/a
10	CCNT2	chr12:48512188-48512515	K562	blood:	n/a	n/a
11	POLR2A	chr12:48512114-48513952	SK-N-MC	brain:	n/a	n/a
12	POLR2A	chr12:48512262-48512440	MCF-7	breast:	n/a	n/a
13	TAL1	chr12:48511751-48512433	K562	blood:	n/a	n/a
14	MXI1	chr12:48512308-48514215	IMR90	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:48497262..48501671-chr12:48511273..48513832,5	K562	blood:
2	chr12:48511519..48514886-chr12:48548320..48552889,5	K562	blood:
3	chr12:48496389..48500489-chr12:48511491..48515053,4	K562	blood:
4	chr12:48497586..48502171-chr12:48511099..48514258,8	MCF-7	breast:
5	chr12:48510785..48513717-chr12:48592045..48593630,2	K562	blood:
6	chr12:48511276..48513909-chr12:48515822..48517335,2	K562	blood:

No data

Variant related genes	Relation type
PFKM	TF binding region
ENSG00000269514	Chromatin interaction
ENSG00000177981	Chromatin interaction
ENSG00000079387	Chromatin interaction
ENSG00000152556	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs10082861	0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10219623	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10219645	0.89[ASN][1000 genomes]
rs10467101	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs10875724	0.93[JPT][hapmap]
rs10875725	0.93[GIH][hapmap];1.00[JPT][hapmap]
rs10875730	0.81[EUR][1000 genomes]
rs10875731	0.83[EUR][1000 genomes]
rs10875732	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[EUR][1000 genomes]
rs10875735	0.92[CEU][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10875736	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10875737	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10875738	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10875740	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10875745	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10875746	0.94[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875747	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875748	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10875750	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10875756	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10875762	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10875767	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10875770	0.89[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap]
rs10875772	0.89[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap];0.82[MEX][hapmap]
rs10875792	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10875793	0.82[CHB][hapmap];0.92[JPT][hapmap]
rs11168355	1.00[GIH][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap]
rs11168357	0.96[GIH][hapmap];0.93[JPT][hapmap];0.85[LWK][hapmap];0.85[TSI][hapmap];0.82[YRI][hapmap]
rs11168369	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs11168370	0.82[EUR][1000 genomes]
rs11168371	0.93[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs11168374	0.83[EUR][1000 genomes]
rs11168383	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11168386	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11168401	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11168403	0.85[CEU][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11168413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11168415	0.97[ASN][1000 genomes]
rs11168416	0.97[ASN][1000 genomes]
rs11168418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168420	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11168421	0.94[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11168422	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11168425	0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11168427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11168433	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11168450	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs11168459	0.89[CHB][hapmap];0.88[CHD][hapmap];0.93[JPT][hapmap]
rs11168516	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs11558768	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12228854	0.82[YRI][hapmap]
rs12296244	0.83[EUR][1000 genomes]
rs12297004	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12297470	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12301339	0.89[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12304476	0.84[ASW][hapmap];0.93[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12305182	0.93[JPT][hapmap]
rs12305511	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs12305647	0.83[EUR][1000 genomes]
rs12306290	0.94[ASN][1000 genomes]
rs12306451	0.84[ASW][hapmap];0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12310813	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12310999	0.83[EUR][1000 genomes]
rs12311774	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12311953	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12312134	1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs12313300	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12313404	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12315625	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17122620	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17122666	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17122812	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs1859445	1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2012773	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2079295	0.93[JPT][hapmap]
rs2107638	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2158516	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2228500	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269933	0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2269935	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2269936	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2279464	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2286021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3782910	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3782911	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3809322	0.82[YRI][hapmap]
rs4760609	1.00[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.85[TSI][hapmap]
rs4760619	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4760622	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs4760680	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4760681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4760684	0.97[ASN][1000 genomes]
rs4760687	0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4760689	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4760690	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4760695	0.84[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs4760696	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs4760697	0.94[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap]
rs58952582	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs60106007	0.97[ASN][1000 genomes]
rs60761335	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61343568	0.91[ASN][1000 genomes]
rs61918774	0.83[EUR][1000 genomes]
rs61918806	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61918809	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61918810	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6580659	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7135779	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs719008	0.93[JPT][hapmap]
rs725454	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7299135	0.93[JPT][hapmap]
rs7299271	0.93[JPT][hapmap]
rs73102065	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73102067	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7485355	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7486424	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs8804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs886588	0.84[ASW][hapmap];0.93[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9634261	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs989144	0.93[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758307	chr12:48429702-48825499	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759898	chr12:48429702-48825499	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv508673	chr12:48489786-48567138	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs11168414	ASB8	cis	parietal	SCAN
rs11168414	LMBR1L	cis	cerebellum	SCAN
rs11168414	RP1-228P16.1	cis	Thyroid	GTEx
rs11168414	FAM186B	cis	parietal	SCAN
rs11168414	RP1-228P16.1	cis	Adipose Subcutaneous	GTEx
rs11168414	SENP1	cis	cerebellum	SCAN
rs11168414	PRKAG1	cis	parietal	SCAN
rs11168414	RP1-228P16.1	cis	Skin Sun Exposed Lower leg	GTEx
rs11168414	LOC255411	cis	cerebellum	SCAN
rs11168414	SENP1	cis	parietal	SCAN
rs11168414	RP1-228P16.1	cis	Artery Tibial	GTEx
rs11168414	ASB8	cis	cerebellum	SCAN
rs11168414	RP1-228P16.1	cis	Heart Left Ventricle	GTEx
rs11168414	H1FNT	cis	cerebellum	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48511400-48512400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr12:48512000-48512600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:48512200-48512400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:48512200-48512400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr12:48512200-48512400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr12:48512200-48512400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:48512200-48512400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:48512200-48512400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:48512200-48512400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr12:48512200-48512400	Enhancers	Brain Germinal Matrix	brain
11	chr12:48512200-48512400	Enhancers	Duodenum Mucosa	Duodenum
12	chr12:48512200-48512400	Enhancers	Fetal Intestine Large	intestine
13	chr12:48512200-48512400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr12:48512200-48512400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr12:48512200-48512400	Enhancers	Rectal Smooth Muscle	rectum
16	chr12:48512200-48512400	Enhancers	A549	lung
17	chr12:48512200-48512400	Enhancers	Dnd41	blood
18	chr12:48512200-48512400	Active TSS	GM12878-XiMat	blood
19	chr12:48512200-48512600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:48512200-48512600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr12:48512200-48512600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr12:48512200-48512600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr12:48512200-48512600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr12:48512200-48512600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr12:48512200-48512600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr12:48512200-48512600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:48512200-48512600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
28	chr12:48512200-48512600	Enhancers	Colon Smooth Muscle	Colon
29	chr12:48512200-48512600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr12:48512200-48512600	Enhancers	Fetal Heart	heart
31	chr12:48512200-48512600	Enhancers	Fetal Lung	lung
32	chr12:48512200-48512600	Enhancers	Fetal Muscle Leg	muscle
33	chr12:48512200-48512600	Enhancers	Stomach Mucosa	stomach
34	chr12:48512200-48512800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:48512200-48512800	Flanking Active TSS	Hela-S3	cervix
36	chr12:48512200-48512800	Flanking Active TSS	K562	blood

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