Variant report

Variant	rs11168721
Chromosome Location	chr12:49147447-49147448
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:49147216..49147856-chr12:49189400..49190331,3	MCF-7	breast:
2	chr12:49147119..49147960-chr12:49208029..49209040,6	MCF-7	breast:
3	chr12:49147074..49149504-chr12:49154307..49156810,2	MCF-7	breast:
4	chr12:49146911..49147822-chr12:49329907..49330804,2	K562	blood:
5	chr12:49147414..49150130-chr12:49207640..49210024,2	MCF-7	breast:
6	chr12:49146911..49149317-chr12:49187384..49190863,4	MCF-7	breast:
7	chr12:49110607..49113147-chr12:49147277..49149275,2	MCF-7	breast:
8	chr12:49147197..49147937-chr12:49189254..49190377,13	K562	blood:
9	chr12:49146924..49147929-chr12:49189063..49190278,10	MCF-7	breast:
10	chr12:49145783..49148535-chr12:49181411..49185206,3	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000174233	Chromatin interaction
ENSG00000167535	Chromatin interaction
ENSG00000129315	Chromatin interaction
ENSG00000257660	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10783282	0.85[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs10783283	0.84[ASN][1000 genomes]
rs11168713	0.82[ASN][1000 genomes]
rs11168714	0.82[ASN][1000 genomes]
rs11168720	0.85[ASN][1000 genomes]
rs11168723	0.85[ASN][1000 genomes]
rs11168724	0.82[ASN][1000 genomes]
rs12172773	0.89[ASN][1000 genomes]
rs12424545	0.83[ASN][1000 genomes]
rs12829842	0.83[ASN][1000 genomes]
rs1908518	0.90[AFR][1000 genomes]
rs4760644	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7954589	0.84[ASN][1000 genomes]
rs953672	0.85[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332169	chr12:49005807-49150691	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:49134600-49161800	Weak transcription	A549	lung
2	chr12:49144000-49147800	Weak transcription	Placenta	Placenta
3	chr12:49144800-49158400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr12:49144800-49159400	Weak transcription	HSMMtube	muscle
5	chr12:49145400-49152000	Weak transcription	Stomach Mucosa	stomach
6	chr12:49145400-49158400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:49145400-49158600	Weak transcription	Gastric	stomach
8	chr12:49146800-49147800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr12:49147400-49152200	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links